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    rpl26 ribosomal protein L26 [ Ictalurus punctatus (channel catfish) ]

    Gene ID: 100305050, updated on 20-Aug-2024

    Summary

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    Gene symbol
    rpl26
    Gene description
    ribosomal protein L26
    See related
    EnsemblRapid:ENSIPUG00020026690
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Ictalurus punctatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
    Annotation information
    Annotation category: partial on reference assembly
    Orthologs
    zebrafish all
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    Genomic context

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    See rpl26 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_03 current Coco_2.0 (GCF_001660625.3) 14 NC_030429.2 (10197534..10202494)
    101 previous assembly IpCoco_1.2 (GCF_001660625.2) 14 NC_030429.1 (18043253..18047975, complement)

    Chromosome 14 - NC_030429.2Genomic Context describing neighboring genes Neighboring gene arylsulfatase family, member Ia Neighboring gene interleukin-17B Neighboring gene ATPase H+ transporting V0 subunit e1 Neighboring gene thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 2 Neighboring gene nuclear cap-binding protein subunit 1 Neighboring gene uncharacterized LOC108274942

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Translational machinery of channel catfish: II. Complementary DNA and expression of the complete set of 47 60S ribosomal proteins. Patterson A, et al. Gene, 2003 Feb 27. PMID 12609735
    2. Transcriptome Display During Testicular Differentiation of Channel Catfish (Ictalurus punctatus) as Revealed by RNA-Seq Analysis. Zeng Q, et al. Biol Reprod, 2016 Jul. PMID 27307075, Free PMC Article
    3. Efficient assembly and annotation of the transcriptome of catfish by RNA-Seq analysis of a doubled haploid homozygote. Liu S, et al. BMC Genomics, 2012 Nov 5. PMID 23127152, Free PMC Article
    4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cytoplasmic translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ribosomal large subunit biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytosolic large ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    60S ribosomal protein L26

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001200285.1 → NP_001187214.1  60S ribosomal protein L26

      See identical proteins and their annotated locations for NP_001187214.1

      Status: PROVISIONAL

      Source sequence(s)
      AF401580
      UniProtKB/TrEMBL
      Q90YU2
      Related
      ENSIPUP00020050847.1, ENSIPUT00020064315.1
      Conserved Domains (1) summary
      pfam16906
      Location:8 → 122
      Ribosomal_L26; Ribosomal proteins L26 eukaryotic, L24P archaeal

    RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Coco_2.0 Primary Assembly

    Genomic

    1. NC_030429.2 Reference Coco_2.0 Primary Assembly

      Range
      10197534..10202494
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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