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    rps6 ribosomal protein S6 [ Ictalurus punctatus (channel catfish) ]

    Gene ID: 100304560, updated on 24-Aug-2024

    Summary

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    Gene symbol
    rps6
    Gene description
    ribosomal protein S6
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Ictalurus punctatus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Ictaluridae; Ictalurus
    Orthologs
    human zebrafish all
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    Genomic context

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    See rps6 in Genome Data Viewer
    Location:
    chromosome: 29
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2023_03 current Coco_2.0 (GCF_001660625.3) 29 NC_030444.2 (15842357..15846191, complement)
    101 previous assembly IpCoco_1.2 (GCF_001660625.2) 29 NC_030444.1 (14743678..14747512, complement)

    Chromosome 29 - NC_030444.2Genomic Context describing neighboring genes Neighboring gene transfer RNA arginine (anticodon UCU) Neighboring gene DnaJ heat shock protein family (Hsp40) member A1 Neighboring gene SMU1 DNA replication regulator and spliceosomal factor b Neighboring gene alkaline ceramidase 2 Neighboring gene bloodthirsty-related gene family, member 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Translational machinery of channel catfish: I. A transcriptomic approach to the analysis of 32 40S ribosomal protein genes and their expression. Karsi A, et al. Gene, 2002 May 29. PMID 12095691
    2. Transcriptome Display During Testicular Differentiation of Channel Catfish (Ictalurus punctatus) as Revealed by RNA-Seq Analysis. Zeng Q, et al. Biol Reprod, 2016 Jul. PMID 27307075, Free PMC Article
    3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    small ribosomal subunit protein eS6
    Names
    40S ribosomal protein S6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001200142.1 → NP_001187071.1  small ribosomal subunit protein eS6

      See identical proteins and their annotated locations for NP_001187071.1

      Status: PROVISIONAL

      Source sequence(s)
      AF402814
      UniProtKB/Swiss-Prot
      Q90YR8
      Conserved Domains (1) summary
      cl00931
      Location:1 → 215
      Ribosomal_S6e; Ribosomal protein S6e

    RefSeqs of Annotated Genomes: GCF_001660625.3-RS_2023_03

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Coco_2.0 Primary Assembly

    Genomic

    1. NC_030444.2 Reference Coco_2.0 Primary Assembly

      Range
      15842357..15846191 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q90YR8.1 GenPept UniProtKB/Swiss-Prot:Q90YR8

    Gene LinkOut

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