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    atg3 autophagy-associated protein Atg3 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2541025, updated on 18-Sep-2024

    Summary

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    Official Symbol
    atg3
    Official Full Name
    autophagy-associated protein Atg3
    Primary source
    PomBase:SPBC3B9.06c
    Locus tag
    SPOM_SPBC3B9.06C
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
    Also known as
    apg3
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    Genomic context

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    See atg3 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    3
    Sequence:
    Chromosome: II; NC_003423.3 (3998467..3999709, complement)

    Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene methyltransferase Neighboring gene mRNA-decapping complex regulatory subunit Dcp1 Neighboring gene protein TIM chaperone Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene DNA-directed RNA polymerase I complex subunit Rpa43 Neighboring gene protein mago nashi

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003423.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Regulation of inorganic polyphosphate is required for proper vacuolar proteolysis in fission yeast. Sawada N, et al. J Biol Chem, 2021 Jul. PMID 34147496, Free PMC Article
    2. Autophagy-deficient Schizosaccharomyces pombe mutants undergo partial sporulation during nitrogen starvation. Mukaiyama H, et al. Microbiology (Reading), 2009 Dec. PMID 19778961
    3. Global analysis of fission yeast mating genes reveals new autophagy factors. Sun LL, et al. PLoS Genet, 2013. PMID 23950735, Free PMC Article
    4. Phosphorylation of the RNA-binding protein Zfs1 modulates sexual differentiation in fission yeast. Navarro FJ, et al. J Cell Sci, 2017 Dec 15. PMID 29084823, Free PMC Article
    5. Genetic interactions and functional analyses of the fission yeast gsk3 and amk2 single and double mutants defective in TORC1-dependent processes. Rallis C, et al. Sci Rep, 2017 Mar 10. PMID 28281664, Free PMC Article

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables Atg8-family conjugating enzyme activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    contributes_to Atg8-family ligase activity ISO
    Inferred from Sequence Orthology
    more info
    		  
    Process Evidence Code Pubs
    involved_in autophagosome assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in autophagy of mitochondrion IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in glycophagy IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in macroautophagy IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in nucleophagy IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytosol HDA PubMed 
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in nucleus HDA PubMed 
    is_active_in phagophore assembly site IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    autophagy-associated protein Atg3

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003423.3 Reference assembly

      Range
      3998467..3999709 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001022586.3 → NP_596664.1  autophagy-associated protein Atg3 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_596664.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      O43035
      Conserved Domains (3) summary
      pfam03986
      Location:5 → 124
      Autophagy_N; Autophagocytosis associated protein (Atg3), N-terminal domain
      pfam03987
      Location:166 → 228
      Autophagy_act_C; Autophagocytosis associated protein, active-site domain
      pfam10381
      Location:249 → 273
      Autophagy_C; Autophagocytosis associated protein C-terminal
    Nucleotide Protein
    Heading Accession and Version

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