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    cip1 RNA-binding protein Cip1 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2539823, updated on 18-Sep-2024

    Summary

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    Official Symbol
    cip1
    Official Full Name
    RNA-binding protein Cip1
    Primary source
    PomBase:SPBC16A3.18
    Locus tag
    SPOM_SPBC16A3.18
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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    Genomic context

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    See cip1 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    1
    Sequence:
    Chromosome: II; NC_003423.3 (4261818..4264077, complement)

    Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene NuA4 histone acetyltransferase complex subunit Eaf7 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene transporter Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003423.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Cip1 and Cip2 are novel RNA-recognition-motif proteins that counteract Csx1 function during oxidative stress. Martín V, et al. Mol Biol Cell, 2006 Mar. PMID 16407405, Free PMC Article
    2. Upf1, an RNA helicase required for nonsense-mediated mRNA decay, modulates the transcriptional response to oxidative stress in fission yeast. Rodríguez-Gabriel MA, et al. Mol Cell Biol, 2006 Sep. PMID 16914721, Free PMC Article
    3. Endogenous U2·U5·U6 snRNA complexes in S. pombe are intron lariat spliceosomes. Chen W, et al. RNA, 2014 Mar. PMID 24442611, Free PMC Article
    4. Large scale screening of genetic interaction with sgf73(+) in fission yeast. Guo Y, et al. Yi Chuan, 2014 Jul. PMID 25076038
    5. Systematic analysis reveals the prevalence and principles of bypassable gene essentiality. Li J, et al. Nat Commun, 2019 Mar 1. PMID 30824696, Free PMC Article

    See all (15) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables mRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    is_active_in cytosol HDA PubMed 
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of post-mRNA release spliceosomal complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RNA-binding protein Cip1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003423.3 Reference assembly

      Range
      4261818..4264077 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001023792.3 → NP_596771.1  RNA-binding protein Cip1 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_596771.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      O42923
      Conserved Domains (3) summary
      COG0724
      Location:94 → 343
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      cd12253
      Location:201 → 279
      RRM_PIN4_like; RNA recognition motif in yeast RNA-binding protein PIN4, fission yeast RNA-binding post-transcriptional regulators cip1, cip2 and similar proteins
      pfam13025
      Location:278 → 310
      DUF3886; Protein of unknown function (DUF3886)
    Nucleotide Protein
    Heading Accession and Version

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