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    SPBC29A10.12 HMG-box [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2540542, updated on 17-May-2024

    Summary

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    Gene symbol
    SPBC29A10.12
    Gene description
    HMG-box
    Primary source
    PomBase:SPBC29A10.12
    Locus tag
    SPBC29A10.12
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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    Genomic context

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    See SPBC29A10.12 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    2
    Sequence:
    Chromosome: II; NC_003423.3 (2566213..2567353)

    Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene putative CAF1 family ribonuclease Neighboring gene putative tRNA-splicing endonuclease positive effector Neighboring gene putative guanyl-nucleotide exchange factor Vps902 Neighboring gene putative F0-ATPase subunit D Neighboring gene miscRNA Neighboring gene meiotic cohesin complex subunit Rec8

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003423.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Pap1-Oxs1 signaling pathway for disulfide stress in Schizosaccharomyces pombe. He Y, et al. Nucleic Acids Res, 2017 Jan 9. PMID 27664222, Free PMC Article
    2. Protection from Disulfide Stress by Inhibition of Pap1 Nuclear Export in Schizosaccharomyces pombe. Chen Y, et al. Genetics, 2018 Nov. PMID 30181192, Free PMC Article
    3. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
    4. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. A Pap1-Oxs1 signaling pathway for disulfide stress in Schizosaccharomyces pombe has been characterized.
      Title: A Pap1-Oxs1 signaling pathway for disulfide stress in Schizosaccharomyces pombe.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables transcription coactivator activity EXP
    Inferred from Experiment
    more info
    		 PubMed 
    enables transcription coactivator activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables transcription coactivator activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in cellular response to oxidative stress IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in transcription by RNA polymerase II IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    is_active_in cytosol HDA PubMed 
    is_active_in nucleus HDA PubMed 
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    HMG-box

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003423.3 Reference assembly

      Range
      2566213..2567353
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001021968.2 → NP_596057.1  HMG-box variant [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_596057.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      O94389
      Conserved Domains (1) summary
      pfam06244
      Location:51 → 178
      DUF1014; Protein of unknown function (DUF1014)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Molecular Biology Databases
    Research Materials