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    rpo41 RNA polymerase Rpo41 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2542687, updated on 18-Sep-2024

    Summary

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    Official Symbol
    rpo41
    Official Full Name
    RNA polymerase Rpo41
    Primary source
    PomBase:SPAC26H5.12
    Locus tag
    SPOM_SPAC26H5.12
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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    Genomic context

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    See rpo41 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    1
    Sequence:
    Chromosome: I; NC_003424.3 (4147667..4151509)

    Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene translation elongation factor eIF5A Neighboring gene spore wall assembly protein Neighboring gene ncRNA Neighboring gene inositol phoshorylceramide synthase regulatory subunit Kei1 Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003424.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification and characterization of the mitochondrial RNA polymerase and transcription factor in the fission yeast Schizosaccharomyces pombe. Jiang H, et al. Nucleic Acids Res, 2011 Jul. PMID 21357609, Free PMC Article
    2. A genome wide study in fission yeast reveals nine PPR proteins that regulate mitochondrial gene expression. Kühl I, et al. Nucleic Acids Res, 2011 Oct. PMID 21727087, Free PMC Article
    3. Pfh1 Is an Accessory Replicative Helicase that Interacts with the Replisome to Facilitate Fork Progression and Preserve Genome Integrity. McDonald KR, et al. PLoS Genet, 2016 Sep. PMID 27611590, Free PMC Article
    4. Predicting the fission yeast protein interaction network. Pancaldi V, et al. G3 (Bethesda), 2012 Apr. PMID 22540037, Free PMC Article
    5. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Deletion mutants show rpo41 to be essential for cell growth, cell morphology and mitochondrial membrane potential.
      Title: Identification and characterization of the mitochondrial RNA polymerase and transcription factor in the fission yeast Schizosaccharomyces pombe.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables DNA-directed 5'-3' RNA polymerase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables mitochondrial promoter sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables mitochondrial promoter sequence-specific DNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mitochondrial transcription IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in transcription initiation at mitochondrial promoter IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cytoplasm HDA PubMed 
    is_active_in cytosol HDA PubMed 
    part_of mitochondrial DNA-directed RNA polymerase complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of mitochondrial DNA-directed RNA polymerase complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    is_active_in mitochondrial matrix ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    is_active_in mitochondrion IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RNA polymerase Rpo41

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003424.3 Reference assembly

      Range
      4147667..4151509
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001019888.3 → NP_594459.2  RNA polymerase Rpo41 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_594459.2

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      O13993
      Conserved Domains (4) summary
      COG5108
      Location:35 → 1154
      RPO41; Mitochondrial DNA-directed RNA polymerase [Transcription]
      pfam00940
      Location:731 → 1153
      RNA_pol; DNA-dependent RNA polymerase
      pfam14700
      Location:288 → 606
      RPOL_N; DNA-directed RNA polymerase N-terminal
      cl19252
      Location:411 → 478
      MreC; rod shape-determining protein MreC
    Nucleotide Protein
    Heading Accession and Version

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