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    trs20 TRAPP complex subunit Trs20 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2539833, updated on 18-Sep-2024

    Summary

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    Official Symbol
    trs20
    Official Full Name
    TRAPP complex subunit Trs20
    Primary source
    PomBase:SPBC11G11.04
    Locus tag
    SPOM_SPBC11G11.04
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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    Genomic context

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    See trs20 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    4
    Sequence:
    Chromosome: II; NC_003423.3 (1762423..1763290)

    Chromosome II - NC_003423.3Genomic Context describing neighboring genes Neighboring gene protein Fis1 Neighboring gene actin cortical patch component End3 Neighboring gene ncRNA Neighboring gene mRNA turnover and ribosome assembly protein Mrt4 Neighboring gene Sm snRNP core protein Sme1 Neighboring gene DNA-directed RNA polymerase I complex subunit Rpa34 Neighboring gene ncRNA Neighboring gene karyopherin Mtr10

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003423.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Post-transcriptional regulation of meiotic genes by a nuclear RNA silencing complex. Egan ED, et al. RNA, 2014 Jun. PMID 24713849, Free PMC Article
    2. A Proteome-wide Fission Yeast Interactome Reveals Network Evolution Principles from Yeasts to Human. Vo TV, et al. Cell, 2016 Jan 14. PMID 26771498, Free PMC Article
    3. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
    4. Transcription and RNA-processing in fission yeast mitochondria. Schäfer B, et al. RNA, 2005 May. PMID 15811919, Free PMC Article
    5. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in intra-Golgi vesicle-mediated transport IC
    Inferred by Curator
    more info
    		  
    involved_in intracellular protein transport IC
    Inferred by Curator
    more info
    		  
    involved_in macroautophagy IC
    Inferred by Curator
    more info
    		  
    Component Evidence Code Pubs
    part_of TRAPP complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of TRAPPI protein complex ISO
    Inferred from Sequence Orthology
    more info
    		  
    part_of TRAPPII protein complex ISO
    Inferred from Sequence Orthology
    more info
    		  
    part_of TRAPPIII protein complex ISO
    Inferred from Sequence Orthology
    more info
    		  
    is_active_in cis-Golgi network IC
    Inferred by Curator
    more info
    		  
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in cytosol HDA PubMed 
    is_active_in nucleus HDA PubMed 
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    TRAPP complex subunit Trs20

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003423.3 Reference assembly

      Range
      1762423..1763290
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001021620.3 → NP_595722.1  TRAPP complex subunit Trs20 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_595722.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      Q9USZ5
      Conserved Domains (1) summary
      COG5603
      Location:1 → 136
      TRS20; Subunit of TRAPP, an ER-Golgi tethering complex [Cell motility and secretion]
    Nucleotide Protein
    Heading Accession and Version

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