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    sam50 sorting and assembly machinery complex subunit Sam50 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2542441, updated on 18-Sep-2024

    Summary

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    Official Symbol
    sam50
    Official Full Name
    sorting and assembly machinery complex subunit Sam50
    Primary source
    PomBase:SPAC17C9.06
    Locus tag
    SPOM_SPAC17C9.06
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
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    Genomic context

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    See sam50 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    2
    Sequence:
    Chromosome: I; NC_003424.3 (4488524..4490395, complement)

    Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene dolichyl glucosyltransferase Alg8 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene mediator complex subunit Med27 Neighboring gene translation initiation factor eIF4G

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003424.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Mis17 is a regulatory module of the Mis6-Mal2-Sim4 centromere complex that is required for the recruitment of CenH3/CENP-A in fission yeast. Shiroiwa Y, et al. PLoS One, 2011 Mar 21. PMID 21445296, Free PMC Article
    2. ORFeome cloning and global analysis of protein localization in the fission yeast Schizosaccharomyces pombe. Matsuyama A, et al. Nat Biotechnol, 2006 Jul. PMID 16823372
    3. Transcription and RNA-processing in fission yeast mitochondria. Schäfer B, et al. RNA, 2005 May. PMID 15811919, Free PMC Article
    4. The genome sequence of Schizosaccharomyces pombe. Wood V, et al. Nature, 2002 Feb 21. PMID 11859360
    5. The mitochondrial genome of the fission yeast Schizosaccharomyces pombe: highly homologous introns are inserted at the same position of the otherwise less conserved cox1 genes in Schizosaccharomyces pombe and Aspergillus nidulans. Lang BF. EMBO J, 1984 Sep. PMID 6092057, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in protein insertion into mitochondrial outer membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    part_of SAM complex ISO
    Inferred from Sequence Orthology
    more info
    		  
    is_active_in mitochondrion HDA PubMed 

    General protein information

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    Preferred Names
    sorting and assembly machinery complex subunit Sam50

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003424.3 Reference assembly

      Range
      4488524..4490395 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001020028.3 → NP_594600.1  sorting and assembly machinery complex subunit Sam50 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_594600.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      Q10478
      Conserved Domains (3) summary
      COG4775
      Location:1 → 474
      BamA; Outer membrane protein assembly factor BamA [Cell wall/membrane/envelope biogenesis]
      pfam01103
      Location:156 → 474
      Bac_surface_Ag; Surface antigen
      pfam07244
      Location:46 → 130
      POTRA; Surface antigen variable number repeat
    Nucleotide Protein
    Heading Accession and Version

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