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    msa1 RNA-binding protein Msa1 [ Schizosaccharomyces pombe (fission yeast) ]

    Gene ID: 2542861, updated on 18-Sep-2024

    Summary

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    Official Symbol
    msa1
    Official Full Name
    RNA-binding protein Msa1
    Primary source
    PomBase:SPAC13G7.13c
    Locus tag
    SPOM_SPAC13G7.13C
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Schizosaccharomyces pombe (strain: 972h-)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces
    Also known as
    SPAC6C3.01c
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    Genomic context

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    See msa1 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    1
    Sequence:
    Chromosome: I; NC_003424.3 (2318492..2322825, complement)

    Chromosome I - NC_003424.3Genomic Context describing neighboring genes Neighboring gene ncRNA Neighboring gene choline kinase Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene CHCH domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003424.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Interaction between a negative regulator (Msa2/Nrd1) and a positive regulator (Cpc2) of sexual differentiation in Schizosaccharomyces pombe. Jeong HT, et al. Biosci Biotechnol Biochem, 2004 Jul. PMID 15277777
    2. A novel gene, msa1, inhibits sexual differentiation in Schizosaccharomyces pombe. Jeong HT, et al. Genetics, 2004 May. PMID 15166138, Free PMC Article
    3. Posttranslational Arginylation Enzyme Arginyltransferase1 Shows Genetic Interactions With Specific Cellular Pathways in vivo. Wiley DJ, et al. Front Physiol, 2020. PMID 32435206, Free PMC Article
    4. Systematic screen for mutants resistant to TORC1 inhibition in fission yeast reveals genes involved in cellular ageing and growth. Rallis C, et al. Biol Open, 2014 Feb 15. PMID 24463365, Free PMC Article
    5. Predicting the fission yeast protein interaction network. Pancaldi V, et al. G3 (Bethesda), 2012 Apr. PMID 22540037, Free PMC Article

    See all (15) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Msa1, a putative RNA-binding protein, inhibits sexual differentiation in Schizosaccharomyces pombe. [Msa1]
      Title: A novel gene, msa1, inhibits sexual differentiation in Schizosaccharomyces pombe.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by PomBase

    Function Evidence Code Pubs
    enables mRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in negative regulation of conjugation with cellular fusion IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in negative regulation of gene expression IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in cytosol HDA PubMed 

    General protein information

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    Preferred Names
    RNA-binding protein Msa1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003424.3 Reference assembly

      Range
      2318492..2322825 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001019146.3 → NP_593715.2  RNA-binding protein Msa1 [Schizosaccharomyces pombe]

      See identical proteins and their annotated locations for NP_593715.2

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      Q10277, Q9US63
      Conserved Domains (4) summary
      cd00590
      Location:171 → 219
      RRM_SF; RNA recognition motif (RRM) superfamily
      cd12453
      Location:77 → 162
      RRM1_RIM4_like; RNA recognition motif 1 in yeast meiotic activator RIM4 and similar proteins
      cd12454
      Location:362 → 441
      RRM2_RIM4_like; RNA recognition motif 2 in yeast meiotic activator RIM4 and similar proteins
      TIGR01661
      Location:81 → 421
      ELAV_HUD_SF; ELAV/HuD family splicing factor
    Nucleotide Protein
    Heading Accession and Version

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