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    RPL13B ribosomal 60S subunit protein L13B [ Saccharomyces cerevisiae S288C ]

    Gene ID: 855173, updated on 28-Oct-2024

    Summary

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    Official Symbol
    RPL13B
    Official Full Name
    ribosomal 60S subunit protein L13B
    Primary source
    SGD:S000004750
    Locus tag
    YMR142C
    See related
    AllianceGenome:SGD:S000004750; FungiDB:YMR142C; VEuPathDB:YMR142C
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Summary
    Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Involved in macroautophagy. Part of cytosolic large ribosomal subunit. Orthologous to human RPL13 (ribosomal protein L13). [provided by Alliance of Genome Resources, Oct 2024]
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    Genomic context

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    See RPL13B in Genome Data Viewer
    Location:
    chromosome: XIII
    Exon count:
    2
    Sequence:
    Chromosome: XIII; NC_001145.3 (550206..551207, complement)

    Chromosome XIII - NC_001145.3Genomic Context describing neighboring genes Neighboring gene Sip5p Neighboring gene uncharacterized protein Neighboring gene ribosomal 40S subunit protein S16A Neighboring gene Fdo1p

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_001145.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Presence of Not5 and ubiquitinated Rps7A in polysome fractions depends upon the Not4 E3 ligase. Panasenko OO, et al. Mol Microbiol, 2012 Feb. PMID 22243599
    2. Inorganic phosphate deprivation causes tRNA nuclear accumulation via retrograde transport in Saccharomyces cerevisiae. Hurto RL, et al. Genetics, 2007 Jun. PMID 17409072, Free PMC Article
    3. Ribosomal proteins produced in excess are degraded by the ubiquitin-proteasome system. Sung MK, et al. Mol Biol Cell, 2016 Sep 1. PMID 27385339, Free PMC Article
    4. Expression of proteins with dimethylarginines in Escherichia coli for protein-protein interaction studies. Hsieh CH, et al. Protein Sci, 2007 May. PMID 17456744, Free PMC Article
    5. Mutator genes for suppression of gross chromosomal rearrangements identified by a genome-wide screening in Saccharomyces cerevisiae. Smith S, et al. Proc Natl Acad Sci U S A, 2004 Jun 15. PMID 15184655, Free PMC Article

    See all (110) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables structural constituent of ribosome IC
    Inferred by Curator
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in cytoplasmic translation IC
    Inferred by Curator
    more info
    		 PubMed 
    involved_in macroautophagy IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of cytosolic large ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of cytosolic large ribosomal subunit IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    ribosomal 60S subunit protein L13B
    NP_013862.1
    • Ribosomal 60S subunit protein L13B; not essential for viability; homologous to mammalian ribosomal protein L13, no bacterial homolog; RPL13B has a paralog, RPL13A, that arose from the whole genome duplication

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001145.3 Reference assembly

      Range
      550206..551207 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001182644.1 → NP_013862.1  TPA: ribosomal 60S subunit protein L13B [Saccharomyces cerevisiae S288C]

      See identical proteins and their annotated locations for NP_013862.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      D6VZW4, P40212
      UniProtKB/TrEMBL
      A6ZMK1, B3LM30, C8ZEZ8, G2WKJ3
      Conserved Domains (1) summary
      pfam01294
      Location:8 → 175
      Ribosomal_L13e; Ribosomal protein L13e
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P40212.1

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