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    LINC02028 long intergenic non-protein coding RNA 2028 [ Homo sapiens (human) ]

    Gene ID: 285389, updated on 22-Oct-2024

    Summary

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    Official Symbol
    LINC02028provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2028provided by HGNC
    Primary source
    HGNC:HGNC:27718
    See related
    Ensembl:ENSG00000230102 AllianceGenome:HGNC:27718
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in testis (RPKM 1.2), liver (RPKM 0.5) and 6 other tissues See more
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    Genomic context

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    See LINC02028 in Genome Data Viewer
    Location:
    3q29
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 3 NC_000003.12 (194005456..194070970, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 3 NC_060927.1 (196702110..196767637, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (193723245..193788759, complement)

    Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105374287 Neighboring gene Sharpr-MPRA regulatory region 4772 Neighboring gene VISTA enhancer hs1344 Neighboring gene VISTA enhancer hs1453 Neighboring gene long intergenic non-protein coding RNA 2026 Neighboring gene Sharpr-MPRA regulatory region 6900 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr3:193714630-193715557 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15011 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:193721507-193722022 Neighboring gene developmental pluripotency associated 2 pseudogene 3 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:193749967-193750544 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:193774732-193775677 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21011 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr3:193780351-193780851 Neighboring gene uncharacterized LOC102724877 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15012 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21012 Neighboring gene Sharpr-MPRA regulatory region 14852 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21013 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21014 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15013 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15014 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr3:193853895-193855094 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15015 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21016 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr3:193858467-193859461 Neighboring gene RNA, 7SL, cytoplasmic 215, pseudogene Neighboring gene hes family bHLH transcription factor 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_136179.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AI701578, BX096813

    2. NR_136180.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC024559, AI701578, AI818666
      Related
      ENST00000753619.1

    3. NR_136181.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC024559
      Related
      ENST00000432154.5

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000003.12 Reference GRCh38.p14 Primary Assembly

      Range
      194005456..194070970 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060927.1 Alternate T2T-CHM13v2.0

      Range
      196702110..196767637 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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