U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    CTB-49A3.2 uncharacterized CTB-49A3.2 [ Homo sapiens (human) ]

    Gene ID: 105379181, updated on 17-Sep-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    CTB-49A3.2
    Gene description
    uncharacterized CTB-49A3.2
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See CTB-49A3.2 in Genome Data Viewer
    Location:
    5q31.1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (133207887..133226040)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (133727626..133745757)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105379178 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:132531489-132531990 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:132535193-132535692 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr5:132555882-132557081 Neighboring gene ribosomal protein L6 pseudogene 15 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:132571312-132572176 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:132575776-132576276 Neighboring gene H3K27ac hESC enhancer GRCh37_chr5:132576277-132576777 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:132579499-132580020 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr5:132581181-132582380 Neighboring gene uncharacterized LOC124901067 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:132598157-132598658 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23103 Neighboring gene follistatin like 4 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:132649525-132650026 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:132650027-132650526 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:132654697-132655214 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:132655215-132655731 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr5:132663701-132664408 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:132664409-132665116 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr5:132667351-132667874 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:132667875-132668398 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:132676759-132677258 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:132677626-132677813 Neighboring gene uncharacterized LOC124901068 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:132699589-132700090 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr5:132700914-132701437 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr5:132706200-132707399

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

    GeneRIFs: Gene References Into Functions

    Phenotypes

    Go to the top of the page Help

    Review eQTL and phenotype association data in this region using PheGenI

    Variation

    Go to the top of the page Help

    See studies and variants in dbVar

    See Variation Viewer (GRCh38)

    Genotypes

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      133207887..133226040
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007058938.1 RNA Sequence

    2. XR_001742887.2 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      133727626..133745757
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007075953.1 RNA Sequence

    2. XR_007075952.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials