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    Trappc5 trafficking protein particle complex subunit 5 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 363858, updated on 10-Jul-2024

    Summary

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    Official Symbol
    Trappc5provided by RGD
    Official Full Name
    trafficking protein particle complex subunit 5provided by RGD
    Primary source
    RGD:1563971
    See related
    EnsemblRapid:ENSRNOG00000001003 AllianceGenome:RGD:1563971
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1563971
    Summary
    Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport. Predicted to be located in endoplasmic reticulum. Predicted to be part of TRAPPI protein complex; TRAPPII protein complex; and TRAPPIII protein complex. Orthologous to human TRAPPC5 (trafficking protein particle complex subunit 5). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Kidney (RPKM 83.3), Heart (RPKM 83.0) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Trappc5 in Genome Data Viewer
    Location:
    12p12
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 12 NC_086030.1 (6535574..6539898)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 12 NC_051347.1 (1737666..1741312)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 12 NC_005111.4 (2228670..2232973)

    Chromosome 12 - NC_086030.1Genomic Context describing neighboring genes Neighboring gene mast cell-expressed membrane protein 1 Neighboring gene foxo1-corepressor-like Neighboring gene Fc epsilon receptor II Neighboring gene C-type lectin domain family 4, member G

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. mBET3 is required for the organization of the TRAPP complexes. Menon S, et al. Biochem Biophys Res Commun, 2006 Nov 24. PMID 17027922
    2. C4orf41 and TTC-15 are mammalian TRAPP components with a role at an early stage in ER-to-Golgi trafficking. Scrivens PJ, et al. Mol Biol Cell, 2011 Jun 15. PMID 21525244, Free PMC Article
    3. Synaptic protein ubiquitination in rat brain revealed by antibody-based ubiquitome analysis. Na CH, et al. J Proteome Res, 2012 Sep 7. PMID 22871113, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    part_of TRAPP complex ISO
    Inferred from Sequence Orthology
    more info
    		  
    part_of TRAPPI protein complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of TRAPPII protein complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of TRAPPIII protein complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    trafficking protein particle complex subunit 5
    Names
    trafficking protein particle complex 5

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001108850.2 → NP_001102320.1  trafficking protein particle complex subunit 5

      See identical proteins and their annotated locations for NP_001102320.1

      Status: PROVISIONAL

      Source sequence(s)
      BC158788
      UniProtKB/TrEMBL
      A0A8I5ZRG8, B0BNE3
      Related
      ENSRNOP00000098767.1, ENSRNOT00000154449.1
      Conserved Domains (1) summary
      cd14943
      Location:24 → 175
      TRAPPC5_Trs31; Trs31 subunit of the TRAPP complex

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086030.1 Reference GRCr8

      Range
      6535574..6539898
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039089624.2 → XP_038945552.1  trafficking protein particle complex subunit 5 isoform X1

      UniProtKB/TrEMBL
      A0A8I5ZRG8, B0BNE3
      Related
      ENSRNOP00000001327.3, ENSRNOT00000001327.8
      Conserved Domains (1) summary
      cd14943
      Location:24 → 175
      TRAPPC5_Trs31; Trs31 subunit of the TRAPP complex
    Nucleotide Protein Strain
    Heading Accession and Version

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