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    Y50D4B.4 PAW domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 3565176, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Y50D4B.4
    Official Full Name
    PAW domain-containing protein
    Primary source
    WormBase:WBGene00021743
    Locus tag
    CELE_Y50D4B.4
    See related
    AllianceGenome:WB:WBGene00021743
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity. Predicted to be involved in glycoprotein catabolic process. Predicted to be located in cytoplasm and membrane. Predicted to be active in cytosol and nucleus. [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See Y50D4B.4 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    19
    Sequence:
    Chromosome: V; NC_003283.11 (1092659..1098950)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Protein kinase domain-containing protein Neighboring gene C-type lectin domain-containing protein Neighboring gene Saccharopine dehydrogenase-like C-terminal domain-containing protein;Sacchrp_dh_NADP domain-containing protein Neighboring gene Expressed conserved protein;PB1 domain-containing protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in glycoprotein catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in glycoprotein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    PAW domain-containing protein
    NP_001300267.1
    • Confirmed by transcript evidence
    NP_001300268.1
    • Confirmed by transcript evidence
    NP_001300269.1
    • Confirmed by transcript evidence
    NP_001300270.1
    • Confirmed by transcript evidence
    NP_001300271.1
    • Confirmed by transcript evidence
    NP_001300272.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      1092659..1098950
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001313338.3 → NP_001300267.1  PAW domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0K3ASH9
      Conserved Domains (1) summary
      smart00613
      Location:83 → 170
      PAW; domain present in PNGases and other hypothetical proteins

    2. NM_001313339.3 → NP_001300268.1  PAW domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0K3AW37
      Conserved Domains (1) summary
      smart00613
      Location:83 → 170
      PAW; domain present in PNGases and other hypothetical proteins

    3. NM_001313340.3 → NP_001300269.1  PAW domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0K3AYC5
      Conserved Domains (1) summary
      smart00613
      Location:83 → 170
      PAW; domain present in PNGases and other hypothetical proteins

    4. NM_001313341.3 → NP_001300270.1  PAW domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0K3AT32
      Conserved Domains (1) summary
      smart00613
      Location:83 → 170
      PAW; domain present in PNGases and other hypothetical proteins

    5. NM_001313342.3 → NP_001300271.1  PAW domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0K3AVD4
      Conserved Domains (1) summary
      smart00613
      Location:83 → 170
      PAW; domain present in PNGases and other hypothetical proteins

    6. NM_001313343.3 → NP_001300272.1  PAW domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A0K3ASI0
      Conserved Domains (1) summary
      smart00613
      Location:83 → 170
      PAW; domain present in PNGases and other hypothetical proteins
    Nucleotide Protein
    Heading Accession and Version

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