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    F54G2.1 BAI1-associated protein 3 [ Caenorhabditis elegans ]

    Gene ID: 180562, updated on 2-Nov-2024

    Summary

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    Official Symbol
    F54G2.1
    Official Full Name
    BAI1-associated protein 3
    Primary source
    WormBase:WBGene00018837
    Locus tag
    CELE_F54G2.1
    See related
    AllianceGenome:WB:WBGene00018837
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be located in endosome. Predicted to be active in secretory vesicle. Is expressed in excretory gland cell; intestine; and nervous system. Human ortholog(s) of this gene implicated in familial hemophagocytic lymphohistiocytosis 3. Orthologous to human BAIAP3 (BAI1 associated protein 3) and UNC13D (unc-13 homolog D). [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See F54G2.1 in Genome Data Viewer
    Location:
    chromosome: X
    Exon count:
    25
    Sequence:
    Chromosome: X; NC_003284.9 (2621272..2664373, complement)

    Chromosome X - NC_003284.9Genomic Context describing neighboring genes Neighboring gene glycerophosphocholine cholinephosphodiesterase Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene pseudo Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene PDEase domain-containing protein;Secreted protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003284.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    located_in endosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in secretory vesicle IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    BAI1-associated protein 3
    NP_001024711.1
    • Partially confirmed by transcript evidence
    NP_001024712.3
    • Confirmed by transcript evidence
    NP_001123150.2
    • Confirmed by transcript evidence
    NP_001360644.1
    • Partially confirmed by transcript evidence
    NP_001360645.1
    • Partially confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003284.9 Reference assembly

      Range
      2621272..2664373 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001029540.5 → NP_001024711.1  BAI1-associated protein 3 [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001024711.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      G4RXT8, Q400L7
      Conserved Domains (3) summary
      cd04009
      Location:1100 → 1226
      C2B_Munc13-like; C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins
      cd08676
      Location:210 → 437
      C2A_Munc13-like; C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins
      pfam10540
      Location:978 → 1081
      Membr_traf_MHD; Munc13 (mammalian uncoordinated) homology domain

    2. NM_001373250.3 → NP_001360645.1  BAI1-associated protein 3 [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A4V0IKF3
      Conserved Domains (3) summary
      cd04009
      Location:1020 → 1146
      C2B_Munc13-like; C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins
      cd08676
      Location:130 → 357
      C2A_Munc13-like; C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins
      pfam10540
      Location:897 → 1001
      Membr_traf_MHD; Munc13 (mammalian uncoordinated) homology domain

    3. NM_001373251.1 → NP_001360644.1  BAI1-associated protein 3 [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A4V0IJX7
      Conserved Domains (3) summary
      cd04009
      Location:1028 → 1154
      C2B_Munc13-like; C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins
      cd08676
      Location:130 → 357
      C2A_Munc13-like; C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins
      pfam10540
      Location:897 → 1001
      Membr_traf_MHD; Munc13 (mammalian uncoordinated) homology domain

    4. NM_001029541.7 → NP_001024712.3  BAI1-associated protein 3 [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A4V6M3D1
      Conserved Domains (3) summary
      cd04009
      Location:978 → 1104
      C2B_Munc13-like; C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins
      cd08676
      Location:88 → 315
      C2A_Munc13-like; C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins
      pfam10540
      Location:855 → 959
      Membr_traf_MHD; Munc13 (mammalian uncoordinated) homology domain

    5. NM_001129678.3 → NP_001123150.2  BAI1-associated protein 3 [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A4V0INL2
      Conserved Domains (3) summary
      cd04009
      Location:986 → 1112
      C2B_Munc13-like; C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins
      cd08676
      Location:88 → 315
      C2A_Munc13-like; C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins
      pfam10540
      Location:855 → 959
      Membr_traf_MHD; Munc13 (mammalian uncoordinated) homology domain
    Nucleotide Protein
    Heading Accession and Version

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