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    C06B8.7 SRCR domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 246012, updated on 2-Nov-2024

    Summary

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    Official Symbol
    C06B8.7
    Official Full Name
    SRCR domain-containing protein
    Primary source
    WormBase:WBGene00007372
    Locus tag
    CELE_C06B8.7
    See related
    AllianceGenome:WB:WBGene00007372
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to be involved in cell-cell junction maintenance. Predicted to be active in membrane. [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See C06B8.7 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    25
    Sequence:
    Chromosome: V; NC_003283.11 (15498734..15511421)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Seven TM Receptor Neighboring gene Serpentine Receptor, class H Neighboring gene Serpentine Receptor, class H Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene tRNA-Gly Neighboring gene Large ribosomal subunit protein eL38 Neighboring gene Neur_chan_memb domain-containing protein;Neurotransmitter-gated ion-channel transmembrane domain-containing protein Neighboring gene ncRNA Neighboring gene tRNA-Val

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Process Evidence Code Pubs
    involved_in cell-cell junction maintenance IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    SRCR domain-containing protein
    NP_506859.2
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      15498734..15511421
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_074458.7 → NP_506859.2  SRCR domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_506859.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      O17575
      Conserved Domains (5) summary
      smart00202
      Location:1035 → 1143
      SR; Scavenger receptor Cys-rich
      pfam00059
      Location:2721 → 2817
      Lectin_C; Lectin C-type domain
      pfam00530
      Location:1048 → 1142
      SRCR; Scavenger receptor cysteine-rich domain
      pfam05048
      Location:2408 → 2552
      NosD; Periplasmic copper-binding protein (NosD)
      pfam13229
      Location:248 → 380
      Beta_helix; Right handed beta helix region
    Nucleotide Protein
    Heading Accession and Version

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