U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    bcf-1 bacterial colonization factor [ Caenorhabditis elegans ]

    Gene ID: 3564957, updated on 2-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    bcf-1
    Official Full Name
    bacterial colonization factor
    Primary source
    WormBase:WBGene00019017
    Locus tag
    CELE_F57F4.4
    See related
    AllianceGenome:WB:WBGene00019017
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Located in membrane raft. Is expressed in intestine. [provided by Alliance of Genome Resources, Nov 2024]
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See bcf-1 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    5
    Sequence:
    Chromosome: V; NC_003283.11 (6401379..6408783, complement)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Filaggrin-2-like Neighboring gene HotDog ACOT-type domain-containing protein Neighboring gene ET module Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. f57f4.4p::gfp as a fluorescent reporter for analysis of the C. elegans response to bacterial infection. Julien-Gau I, et al. Dev Comp Immunol, 2014 Feb. PMID 24012871
    2. Bacterial peptidoglycan acts as a digestive signal mediating host adaptation to diverse food resources in C. elegans. Hao F, et al. Nat Commun, 2024 Apr 16. PMID 38627398, Free PMC Article
    3. Analysis of GPI-anchored proteins involved in germline stem cell proliferation in the Caenorhabditis elegans germline stem cell niche. Rikitake M, et al. J Biochem, 2020 Dec 26. PMID 32844210
    4. Galectin LEC-6 interacts with glycoprotein F57F4.4 to cooperatively regulate the growth of Caenorhabditis elegans. Takeuchi T, et al. Biol Pharm Bull, 2011. PMID 21720028
    5. N-glycosylated intestinal protein BCF-1 shapes microbial colonization by binding bacteria via its fimbrial protein. He Y, et al. Cell Rep, 2023 Jan 31. PMID 36662624

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. f57f4.4 expression is specifically induced in the intestine upon bacterial infections, but not in response to abiotic stress.
      Title: f57f4.4p::gfp as a fluorescent reporter for analysis of the C. elegans response to bacterial infection.
    Submit: New GeneRIF Correction

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    located_in membrane raft HDA PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    bacterial colonization factor
    NP_504627.1
    • Confirmed by transcript evidence;
      Product from WormBase gene class bcf

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      6401379..6408783 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_072226.9 → NP_504627.1  bacterial colonization factor [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_504627.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q94247
      Conserved Domains (1) summary
      pfam01684
      Location:1401 → 1480
      ET; ET module
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools