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    T06D4.1 Type I restriction endonuclease subunit R;Type VI secretion system protein TssA [ Caenorhabditis elegans ]

    Gene ID: 173682, updated on 2-Nov-2024

    Summary

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    Official Symbol
    T06D4.1
    Official Full Name
    Type I restriction endonuclease subunit R;Type VI secretion system protein TssA
    Primary source
    WormBase:WBGene00020290
    Locus tag
    CELE_T06D4.1
    See related
    AllianceGenome:WB:WBGene00020290
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Predicted to enable endonuclease activity. [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See T06D4.1 in Genome Data Viewer
    Location:
    chromosome: II
    Exon count:
    11
    Sequence:
    Chromosome: II; NC_003280.10 (3381830..3384025)

    Chromosome II - NC_003280.10Genomic Context describing neighboring genes Neighboring gene BTB domain-containing protein Neighboring gene BTB domain-containing protein Neighboring gene pseudo Neighboring gene Cobyrinic acid ac-diamide synthase Neighboring gene YlbF family regulator

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003280.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification and characterization of novel nicotinic receptor-associated proteins in Caenorhabditis elegans. Gottschalk A, et al. EMBO J, 2005 Jul 20. PMID 15990870, Free PMC Article
    2. SH3 interactome conserves general function over specific form. Xin X, et al. Mol Syst Biol, 2013. PMID 23549480, Free PMC Article
    3. Empirically controlled mapping of the Caenorhabditis elegans protein-protein interactome network. Simonis N, et al. Nat Methods, 2009 Jan. PMID 19123269, Free PMC Article
    4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Gene Ontology Provided by WormBase

    Function Evidence Code Pubs
    enables endonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Type I restriction endonuclease subunit R;Type VI secretion system protein TssA
    NP_001379887.1
    • Confirmed by transcript evidence
    NP_494527.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003280.10 Reference assembly

      Range
      3381830..3384025
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001393037.1 → NP_001379887.1  Type I restriction endonuclease subunit R [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A7DT37

    2. NM_062126.4 → NP_494527.1  Type VI secretion system protein TssA [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_494527.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      O16649
    Nucleotide Protein
    Heading Accession and Version

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