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    HSX1 [ Saccharomyces cerevisiae S288C ]

    Gene ID: 853515, updated on 11-Sep-2024

    Summary

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    Official Symbol
    HSX1
    Primary source
    SGD:S000006707
    Locus tag
    YNCJ0025W
    See related
    AllianceGenome:SGD:S000006707
    Gene type
    tRNA
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Summary
    Predicted to enable triplet codon-amino acid adaptor activity. Predicted to be involved in translational elongation. Predicted to be located in cytosol. [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

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    See HSX1 in Genome Data Viewer
    Location:
    chromosome: X
    Sequence:
    Chromosome: X; NC_001142.9 (538555..538626)

    Chromosome X - NC_001142.9Genomic Context describing neighboring genes Neighboring gene Bfa1p Neighboring gene Kch1p Neighboring gene Hit1p Neighboring gene tRNA-Asp

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_001142.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Pairwise and higher-order genetic interactions during the evolution of a tRNA. Domingo J, et al. Nature, 2018 Jun. PMID 29849145, Free PMC Article
    2. Multi-environment fitness landscapes of a tRNA gene. Li C, et al. Nat Ecol Evol, 2018 Jun. PMID 29686238, Free PMC Article
    3. The fitness landscape of a tRNA gene. Li C, et al. Science, 2016 May 13. PMID 27080104, Free PMC Article
    4. Translational accuracy during exponential, postdiauxic, and stationary growth phases in Saccharomyces cerevisiae. Stahl G, et al. Eukaryot Cell, 2004 Apr. PMID 15075263, Free PMC Article
    5. A rare tRNA-Arg(CCU) that regulates Ty1 element ribosomal frameshifting is essential for Ty1 retrotransposition in Saccharomyces cerevisiae. Kawakami K, et al. Genetics, 1993 Oct. PMID 8243996, Free PMC Article

    See all (19) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    • Arginine tRNA (tRNA-Arg), predicted by tRNAscan-SE analysis; low abundance tRNA required for growth on nonfermentable carbon sources at high temperatures, for synthesis of heat shock protein Ssc1p, and for Ty1 retrotransposition through the regulation of translational frameshifting

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables triplet codon-amino acid adaptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables triplet codon-amino acid adaptor activity ISM
    Inferred from Sequence Model
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in translational elongation IC
    Inferred by Curator
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IC
    Inferred by Curator
    more info
    		 PubMed 

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