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    AT1G78840 F-box/RNI-like/FBD-like domains-containing protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844221, updated on 7-Sep-2023

    Summary

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    Gene symbol
    AT1G78840
    Gene description
    F-box/RNI-like/FBD-like domains-containing protein
    Primary source
    Araport:AT1G78840
    Locus tag
    AT1G78840
    See related
    TAIR:AT1G78840
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F9K20.11; F9K20_11
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    Genomic context

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    See AT1G78840 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Sequence:
    Chromosome: 1; NC_003070.9 (29639290..29641018, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein Neighboring gene Curculin-like (mannose-binding) lectin family protein Neighboring gene D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein Neighboring gene D-mannose binding lectin protein with Apple-like carbohydrate-binding domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    F-box/RNI-like/FBD-like domains-containing protein
    NP_001319408.1
    • F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT5G22670.1); Has 1766 Blast hits to 1735 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1762; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      29639290..29641018 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001334849.1 → NP_001319408.1  F-box/RNI-like/FBD-like domains-containing protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9ZVA3
      UniProtKB/TrEMBL
      A0A5S9WVK2, A0A654ERT7
      Conserved Domains (4) summary
      smart00256
      Location:11 → 44
      FBOX; A Receptor for Ubiquitination Targets
      smart00579
      Location:358 → 435
      FBD; domain in FBox and BRCT domain containing plant proteins
      sd00032
      Location:129 → 149
      LRR_2; leucine-rich repeat [structural motif]
      pfam07723
      Location:149 → 174
      LRR_2; Leucine Rich Repeat

    2. NM_106532.1 → NP_178005.1  F-box/RNI-like/FBD-like domains-containing protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_178005.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9ZVA3
      UniProtKB/TrEMBL
      A0A5S9WVK2, A0A654ERT7
      Conserved Domains (4) summary
      smart00256
      Location:11 → 44
      FBOX; A Receptor for Ubiquitination Targets
      smart00579
      Location:358 → 435
      FBD; domain in FBox and BRCT domain containing plant proteins
      sd00032
      Location:129 → 149
      LRR_2; leucine-rich repeat [structural motif]
      pfam07723
      Location:149 → 174
      LRR_2; Leucine Rich Repeat
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9ZVA3.1

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