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    APC6 anaphase promoting complex 6 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844213, updated on 18-Sep-2024

    Summary

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    Official Symbol
    APC6
    Official Full Name
    anaphase promoting complex 6
    Primary source
    TAIR:AT1G78770
    Locus tag
    AT1G78770
    See related
    Araport:AT1G78770
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    anaphase promoting complex 6; F9K20.19; F9K20_19
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    Genomic context

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    See APC6 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    16
    Sequence:
    Chromosome: 1; NC_003070.9 (29616919..29621447)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene F-box/RNI-like superfamily protein Neighboring gene F-box/RNI-like superfamily protein Neighboring gene pathogenesis-related family protein Neighboring gene centromere protein X Neighboring gene UDP-Glycosyltransferase superfamily protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The APC/C E3 ligase remains active in most post-mitotic Arabidopsis cells and is required for proper vasculature development and organization. Marrocco K, et al. Development, 2009 May. PMID 19336465
    2. Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana. Van Leene J, et al. Mol Syst Biol, 2010 Aug 10. PMID 20706207, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_106524.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within phloem or xylem histogenesis IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within regulation of DNA endoreduplication IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    anaphase promoting complex 6
    NP_565188.1
    • anaphase promoting complex 6 (APC6); FUNCTIONS IN: binding; INVOLVED IN: regulation of DNA endoreduplication, phloem or xylem histogenesis, cell cycle; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-3 (InterPro:IPR011716), Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G04240.1); Has 10888 Blast hits to 7341 proteins in 968 species: Archae - 487; Bacteria - 4678; Metazoa - 2008; Fungi - 460; Plants - 439; Viruses - 0; Other Eukaryotes - 2816 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      29616919..29621447
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106524.2 → NP_565188.1  anaphase promoting complex 6 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565188.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      B3DNN5, Q8GXT0, Q8L5J4, Q8LEK0, Q9ZV95
      UniProtKB/TrEMBL
      A0A178WC28, A0A5S9WVK3, A0A654EVA7
      Conserved Domains (3) summary
      TIGR02917
      Location:323 → 518
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00006
      Location:411 → 439
      TPR; TPR repeat [structural motif]
      pfam12895
      Location:19 → 98
      ANAPC3; Anaphase-promoting complex, cyclosome, subunit 3
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    B3DNN5.1

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