U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Proser2 proline and serine rich 2 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 683460, updated on 17-Aug-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Proser2provided by RGD
    Official Full Name
    proline and serine rich 2provided by RGD
    Primary source
    RGD:1586830
    See related
    EnsemblRapid:ENSRNOG00000045553 AllianceGenome:RGD:1586830
    Gene type
    protein coding
    RefSeq status
    INFERRED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human PROSER2 (proline and serine rich 2). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Lung (RPKM 54.1), Liver (RPKM 40.5) and 9 other tissues See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Proser2 in Genome Data Viewer
    Location:
    17q12.3
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 17 NC_086035.1 (77061371..77096788)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 17 NC_051352.1 (72151961..72187524)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 17 NC_005116.4 (76079641..76140428)

    Chromosome 17 - NC_086035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134482606 Neighboring gene enoyl CoA hydratase domain containing 3 Neighboring gene UPF2, regulator of nonsense mediated mRNA decay Neighboring gene cytochrome c oxidase subunit VIb polypeptide 1-like Neighboring gene dehydrogenase E1 and transketolase domain containing 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    General protein information

    Go to the top of the page Help
    Preferred Names
    proline and serine-rich protein 2

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001400808.1 → NP_001387737.1  proline and serine-rich protein 2

      Status: INFERRED

      Source sequence(s)
      JAXUCZ010000017
      UniProtKB/TrEMBL
      A6JLX3, M0RAK0

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086035.1 Reference GRCr8

      Range
      77061371..77096788
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008771899.3 → XP_008770121.1  proline and serine-rich protein 2 isoform X1

      See identical proteins and their annotated locations for XP_008770121.1

      UniProtKB/TrEMBL
      A6JLX3, M0RAK0
      Conserved Domains (1) summary
      pfam15385
      Location:439 → 469
      SARG; Specifically androgen-regulated gene protein

    2. XM_008771898.4 → XP_008770120.1  proline and serine-rich protein 2 isoform X1

      See identical proteins and their annotated locations for XP_008770120.1

      UniProtKB/TrEMBL
      A6JLX3, M0RAK0
      Conserved Domains (1) summary
      pfam15385
      Location:439 → 469
      SARG; Specifically androgen-regulated gene protein

    3. XM_039096511.2 → XP_038952439.1  proline and serine-rich protein 2 isoform X1

      UniProtKB/TrEMBL
      A6JLX3, M0RAK0
      Related
      ENSRNOP00000066551.1, ENSRNOT00000073933.5
      Conserved Domains (1) summary
      pfam15385
      Location:439 → 469
      SARG; Specifically androgen-regulated gene protein
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools