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    C3h20orf96 similar to human chromosome 20 open reading frame 96 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 502684, updated on 10-Jul-2024

    Summary

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    Official Symbol
    C3h20orf96provided by RGD
    Official Full Name
    similar to human chromosome 20 open reading frame 96provided by RGD
    Primary source
    RGD:1559448
    See related
    EnsemblRapid:ENSRNOG00000023721 AllianceGenome:RGD:1559448
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human C20orf96 (chromosome 20 open reading frame 96). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Testes (RPKM 157.1) and Lung (RPKM 16.6) See more
    Orthologs
    human mouse all
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    Genomic context

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    See C3h20orf96 in Genome Data Viewer
    Location:
    3q41
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (161337376..161368007)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (140876987..140907711)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (147881847..147912447)

    Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene SRY-box transcription factor 12 Neighboring gene zinc finger CCHC-type containing 3 Neighboring gene defensin beta 23 Neighboring gene defensin beta 20

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein C20orf96 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001395620.1 → NP_001382549.1  uncharacterized protein C20orf96 homolog

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000003
      UniProtKB/TrEMBL
      A0A0G2QC30
      Related
      ENSRNOP00000108278.1, ENSRNOT00000134300.1
      Conserved Domains (1) summary
      pfam15397
      Location:98 → 355
      DUF4618; Domain of unknown function (DUF4618)

    RNA

    1. NR_172649.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000003

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086021.1 Reference GRCr8

      Range
      161337376..161368007
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008762378.4 → XP_008760600.1  uncharacterized protein C20orf96 homolog isoform X2

      See identical proteins and their annotated locations for XP_008760600.1

      UniProtKB/TrEMBL
      F1M902, Q5XIK0
      Related
      ENSRNOP00000052282.5, ENSRNOT00000055415.6
      Conserved Domains (1) summary
      pfam15397
      Location:78 → 335
      DUF4618; Domain of unknown function (DUF4618)

    2. XM_006235249.5 → XP_006235311.1  uncharacterized protein C20orf96 homolog isoform X2

      See identical proteins and their annotated locations for XP_006235311.1

      UniProtKB/TrEMBL
      F1M902, Q5XIK0
      Conserved Domains (1) summary
      pfam15397
      Location:78 → 335
      DUF4618; Domain of unknown function (DUF4618)

    3. XM_006235247.5 → XP_006235309.1  uncharacterized protein C20orf96 homolog isoform X1

      See identical proteins and their annotated locations for XP_006235309.1

      UniProtKB/TrEMBL
      A6KHN5
      Conserved Domains (1) summary
      pfam15397
      Location:97 → 354
      DUF4618; Domain of unknown function (DUF4618)

    4. XM_063284406.1 → XP_063140476.1  uncharacterized protein C20orf96 homolog isoform X3

      UniProtKB/TrEMBL
      F1M902, Q5XIK0

    5. XM_006235248.5 → XP_006235310.1  uncharacterized protein C20orf96 homolog isoform X2

      See identical proteins and their annotated locations for XP_006235310.1

      UniProtKB/TrEMBL
      F1M902, Q5XIK0
      Conserved Domains (1) summary
      pfam15397
      Location:78 → 335
      DUF4618; Domain of unknown function (DUF4618)

    6. XM_039105728.2 → XP_038961656.1  uncharacterized protein C20orf96 homolog isoform X4

      Conserved Domains (1) summary
      pfam15397
      Location:27 → 284
      DUF4618; Domain of unknown function (DUF4618)
    Nucleotide Protein Strain
    Heading Accession and Version

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