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    Spetex2l1 Spetex-2 protein like 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 302192, updated on 10-Jul-2024

    Summary

    Official Symbol
    Spetex2l1provided by RGD
    Official Full Name
    Spetex-2 protein like 1provided by RGD
    Primary source
    RGD:1562800
    See related
    EnsemblRapid:ENSRNOG00000046576 AllianceGenome:RGD:1562800
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Expression
    Biased expression in Adrenal (RPKM 204.0), Testes (RPKM 143.5) and 1 other tissue See more
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    Genomic context

    See Spetex2l1 in Genome Data Viewer
    Location:
    9q11
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 9 NC_086027.1 (6409054..6416733)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 9 NC_051344.1 (6172489..6180127)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 16 NC_005115.4 (66363414..66387912)

    Chromosome 9 - NC_086027.1Genomic Context describing neighboring genes Neighboring gene ribosomal protein S26, pseudogene 12 Neighboring gene cofilin 1, pseudogene 4 Neighboring gene uncharacterized LOC120094624 Neighboring gene golgi SNAP receptor complex member 1, pseudogene 1

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General protein information

    Preferred Names
    uncharacterized protein LOC302192

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001409117.1NP_001396046.1  uncharacterized protein LOC302192

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000009
      UniProtKB/TrEMBL
      A0A9K3Y8A8, A4FTZ7, D4AAM2, F1LUV6, F1M534, Q66H08
      Related
      ENSRNOP00000050086.5, ENSRNOT00000050464.6

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086027.1 Reference GRCr8

      Range
      6409054..6416733
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063267049.1XP_063123119.1  uncharacterized protein LOC302192 isoform X1

      UniProtKB/TrEMBL
      Q66H08