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    Fv1 Friend virus susceptibility 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 308568, updated on 10-Oct-2024

    Summary

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    Official Symbol
    Fv1provided by RGD
    Official Full Name
    Friend virus susceptibility 1provided by RGD
    Primary source
    RGD:1309326
    See related
    EnsemblRapid:ENSRNOG00000019132 AllianceGenome:RGD:1309326
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1309326
    Summary
    Orthologous to human C19orf48 (chromosome 19 open reading frame 48). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Testes (RPKM 138.2), Brain (RPKM 133.6) and 9 other tissues See more
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    Genomic context

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    See Fv1 in Genome Data Viewer
    Location:
    1q22
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (103867358..103873336)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (94730839..94736791)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (100220789..100226725)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 1700028J19 gene like Neighboring gene kallikrein 1-related peptidase B3 Neighboring gene uncharacterized LOC102552485 Neighboring gene small nucleolar RNA, C/D box 88C Neighboring gene small nucleolar RNA SNORD88 Neighboring gene small nucleolar RNA, C/D box 88A Neighboring gene small nucleolar RNA, C/D box 88B Neighboring gene acid phosphatase 4 Neighboring gene formyl peptide receptor-related sequence 4 Neighboring gene small integral membrane protein 47

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in response to virus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in Golgi apparatus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein C19orf48 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001014018.2 → NP_001014040.2  uncharacterized protein C19orf48 homolog

      See identical proteins and their annotated locations for NP_001014040.2

      Status: VALIDATED

      Source sequence(s)
      AI574762, BC060592, FM122595
      UniProtKB/TrEMBL
      F1LMA5, Q6P9U2
      Conserved Domains (1) summary
      pfam17687
      Location:179 → 283
      DUF5535; Family of unknown function (DUF5535)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      103867358..103873336
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039111845.2 → XP_038967773.1  uncharacterized protein C19orf48 homolog isoform X1

      UniProtKB/TrEMBL
      F1LMA5, Q6P9U2
      Conserved Domains (1) summary
      pfam17687
      Location:179 → 283
      DUF5535; Family of unknown function (DUF5535)

    2. XM_008759364.4 → XP_008757586.1  uncharacterized protein C19orf48 homolog isoform X1

      See identical proteins and their annotated locations for XP_008757586.1

      UniProtKB/TrEMBL
      F1LMA5, Q6P9U2
      Related
      ENSRNOP00000025846.3, ENSRNOT00000025846.7
      Conserved Domains (1) summary
      pfam17687
      Location:179 → 283
      DUF5535; Family of unknown function (DUF5535)

    3. XM_008759365.4 → XP_008757587.1  uncharacterized protein C19orf48 homolog isoform X1

      See identical proteins and their annotated locations for XP_008757587.1

      UniProtKB/TrEMBL
      F1LMA5, Q6P9U2
      Conserved Domains (1) summary
      pfam17687
      Location:179 → 283
      DUF5535; Family of unknown function (DUF5535)

    4. XM_063261881.1 → XP_063117951.1  uncharacterized protein C19orf48 homolog isoform X1

      UniProtKB/TrEMBL
      F1LMA5

    5. XM_017589137.3 → XP_017444626.1  uncharacterized protein C19orf48 homolog isoform X1

      UniProtKB/TrEMBL
      F1LMA5, Q6P9U2
      Conserved Domains (1) summary
      pfam17687
      Location:179 → 283
      DUF5535; Family of unknown function (DUF5535)

    6. XM_008759362.4 → XP_008757584.1  uncharacterized protein C19orf48 homolog isoform X1

      See identical proteins and their annotated locations for XP_008757584.1

      UniProtKB/TrEMBL
      F1LMA5, Q6P9U2
      Conserved Domains (1) summary
      pfam17687
      Location:179 → 283
      DUF5535; Family of unknown function (DUF5535)

    7. XM_063261790.1 → XP_063117860.1  uncharacterized protein C19orf48 homolog isoform X1

      UniProtKB/TrEMBL
      F1LMA5

    8. XM_063261803.1 → XP_063117873.1  uncharacterized protein C19orf48 homolog isoform X1

      UniProtKB/TrEMBL
      F1LMA5

    9. XM_039111828.2 → XP_038967756.1  uncharacterized protein C19orf48 homolog isoform X1

      UniProtKB/TrEMBL
      F1LMA5, Q6P9U2
      Related
      ENSRNOP00000078871.1, ENSRNOT00000107597.2
      Conserved Domains (1) summary
      pfam17687
      Location:179 → 283
      DUF5535; Family of unknown function (DUF5535)

    10. XM_063261845.1 → XP_063117915.1  uncharacterized protein C19orf48 homolog isoform X1

      UniProtKB/TrEMBL
      F1LMA5

    11. XM_063261792.1 → XP_063117862.1  uncharacterized protein C19orf48 homolog isoform X1

      UniProtKB/TrEMBL
      F1LMA5

    12. XM_039111864.2 → XP_038967792.1  uncharacterized protein C19orf48 homolog isoform X1

      UniProtKB/TrEMBL
      F1LMA5, Q6P9U2
      Conserved Domains (1) summary
      pfam17687
      Location:179 → 283
      DUF5535; Family of unknown function (DUF5535)

    13. XM_039111839.2 → XP_038967767.1  uncharacterized protein C19orf48 homolog isoform X1

      UniProtKB/TrEMBL
      F1LMA5, Q6P9U2
      Conserved Domains (1) summary
      pfam17687
      Location:179 → 283
      DUF5535; Family of unknown function (DUF5535)

    14. XM_063261851.1 → XP_063117921.1  uncharacterized protein C19orf48 homolog isoform X1

      UniProtKB/TrEMBL
      F1LMA5

    15. XM_017589136.3 → XP_017444625.1  uncharacterized protein C19orf48 homolog isoform X1

      UniProtKB/TrEMBL
      F1LMA5, Q6P9U2
      Related
      ENSRNOP00000080059.1, ENSRNOT00000096151.2
      Conserved Domains (1) summary
      pfam17687
      Location:179 → 283
      DUF5535; Family of unknown function (DUF5535)

    16. XM_008759361.4 → XP_008757583.1  uncharacterized protein C19orf48 homolog isoform X1

      See identical proteins and their annotated locations for XP_008757583.1

      UniProtKB/TrEMBL
      F1LMA5, Q6P9U2
      Conserved Domains (1) summary
      pfam17687
      Location:179 → 283
      DUF5535; Family of unknown function (DUF5535)

    17. XM_063261795.1 → XP_063117865.1  uncharacterized protein C19orf48 homolog isoform X1

      UniProtKB/TrEMBL
      F1LMA5

    18. XM_063261812.1 → XP_063117882.1  uncharacterized protein C19orf48 homolog isoform X1

      UniProtKB/TrEMBL
      F1LMA5
      Related
      ENSRNOP00000078714.1, ENSRNOT00000101817.2

    19. XM_063261860.1 → XP_063117930.1  uncharacterized protein C19orf48 homolog isoform X1

      UniProtKB/TrEMBL
      F1LMA5

    20. XM_063261863.1 → XP_063117933.1  uncharacterized protein C19orf48 homolog isoform X1

      UniProtKB/TrEMBL
      F1LMA5

    21. XM_008759354.4 → XP_008757576.1  uncharacterized protein C19orf48 homolog isoform X1

      See identical proteins and their annotated locations for XP_008757576.1

      UniProtKB/TrEMBL
      F1LMA5, Q6P9U2
      Conserved Domains (1) summary
      pfam17687
      Location:179 → 283
      DUF5535; Family of unknown function (DUF5535)

    22. XM_063261821.1 → XP_063117891.1  uncharacterized protein C19orf48 homolog isoform X1

      UniProtKB/TrEMBL
      F1LMA5

    23. XM_008759363.4 → XP_008757585.1  uncharacterized protein C19orf48 homolog isoform X1

      See identical proteins and their annotated locations for XP_008757585.1

      UniProtKB/TrEMBL
      F1LMA5, Q6P9U2
      Conserved Domains (1) summary
      pfam17687
      Location:179 → 283
      DUF5535; Family of unknown function (DUF5535)

    24. XM_008759360.4 → XP_008757582.1  uncharacterized protein C19orf48 homolog isoform X1

      See identical proteins and their annotated locations for XP_008757582.1

      UniProtKB/TrEMBL
      F1LMA5, Q6P9U2
      Related
      ENSRNOP00000076648.1, ENSRNOT00000106002.2
      Conserved Domains (1) summary
      pfam17687
      Location:179 → 283
      DUF5535; Family of unknown function (DUF5535)

    25. XM_017589135.3 → XP_017444624.1  uncharacterized protein C19orf48 homolog isoform X1

      UniProtKB/TrEMBL
      F1LMA5, Q6P9U2
      Conserved Domains (1) summary
      pfam17687
      Location:179 → 283
      DUF5535; Family of unknown function (DUF5535)

    26. XM_008759355.4 → XP_008757577.1  uncharacterized protein C19orf48 homolog isoform X1

      See identical proteins and their annotated locations for XP_008757577.1

      UniProtKB/TrEMBL
      F1LMA5, Q6P9U2
      Conserved Domains (1) summary
      pfam17687
      Location:179 → 283
      DUF5535; Family of unknown function (DUF5535)

    27. XM_063261876.1 → XP_063117946.1  uncharacterized protein C19orf48 homolog isoform X1

      UniProtKB/TrEMBL
      F1LMA5

    28. XM_017589134.3 → XP_017444623.1  uncharacterized protein C19orf48 homolog isoform X1

      UniProtKB/TrEMBL
      F1LMA5, Q6P9U2
      Conserved Domains (1) summary
      pfam17687
      Location:179 → 283
      DUF5535; Family of unknown function (DUF5535)
    Nucleotide Protein Strain
    Heading Accession and Version

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