U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Atosa atos homolog A [ Rattus norvegicus (Norway rat) ]

    Gene ID: 300836, updated on 10-Jul-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Atosaprovided by RGD
    Official Full Name
    atos homolog Aprovided by RGD
    Primary source
    RGD:1310552
    See related
    EnsemblRapid:ENSRNOG00000058522 AllianceGenome:RGD:1310552
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Fam214a; RGD1310552
    Summary
    Orthologous to human FAM214A (family with sequence similarity 214 member A). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Liver (RPKM 105.2), Adrenal (RPKM 101.2) and 9 other tissues See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Atosa in Genome Data Viewer
    Location:
    8q24
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (84575360..84653103)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (75694828..75772565)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (81863619..81941548)

    Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102549203 Neighboring gene one cut homeobox 1 Neighboring gene cAMP-regulated phosphoprotein 19 Neighboring gene myosin VA

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    atos homolog protein A
    Names
    family with sequence similarity 214, member A

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001106838.1 → NP_001100308.1  atos homolog protein A

      See identical proteins and their annotated locations for NP_001100308.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473954
      UniProtKB/TrEMBL
      A6I1A5
      Conserved Domains (2) summary
      pfam13889
      Location:1016 → 1073
      Chromosome_seg; Chromosome segregation during meiosis
      pfam13915
      Location:877 → 934
      DUF4210; Domain of unknown function (DUF4210)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086026.1 Reference GRCr8

      Range
      84575360..84653103
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039081143.2 → XP_038937071.1  atos homolog protein A isoform X3

      UniProtKB/TrEMBL
      A0A0G2JXE4
      Related
      ENSRNOP00000070239.2, ENSRNOT00000080608.3
      Conserved Domains (2) summary
      pfam13889
      Location:1021 → 1078
      Chromosome_seg; Chromosome segregation during meiosis
      pfam13915
      Location:882 → 939
      DUF4210; Domain of unknown function (DUF4210)

    2. XM_039081145.2 → XP_038937073.1  atos homolog protein A isoform X3

      UniProtKB/TrEMBL
      A0A0G2JXE4
      Conserved Domains (2) summary
      pfam13889
      Location:1021 → 1078
      Chromosome_seg; Chromosome segregation during meiosis
      pfam13915
      Location:882 → 939
      DUF4210; Domain of unknown function (DUF4210)

    3. XM_039081144.2 → XP_038937072.1  atos homolog protein A isoform X3

      UniProtKB/TrEMBL
      A0A0G2JXE4
      Conserved Domains (2) summary
      pfam13889
      Location:1021 → 1078
      Chromosome_seg; Chromosome segregation during meiosis
      pfam13915
      Location:882 → 939
      DUF4210; Domain of unknown function (DUF4210)

    4. XM_063265179.1 → XP_063121249.1  atos homolog protein A isoform X4

      UniProtKB/TrEMBL
      A6I1A5

    5. XM_063265180.1 → XP_063121250.1  atos homolog protein A isoform X4

      UniProtKB/TrEMBL
      A6I1A5

    6. XM_039081141.2 → XP_038937069.1  atos homolog protein A isoform X1

      UniProtKB/TrEMBL
      A0A8I5ZMC3
      Related
      ENSRNOP00000079209.1, ENSRNOT00000119004.2
      Conserved Domains (2) summary
      pfam13889
      Location:1028 → 1085
      Chromosome_seg; Chromosome segregation during meiosis
      pfam13915
      Location:889 → 946
      DUF4210; Domain of unknown function (DUF4210)

    7. XM_039081142.2 → XP_038937070.1  atos homolog protein A isoform X2

      UniProtKB/TrEMBL
      A6I1A7
      Conserved Domains (2) summary
      pfam13889
      Location:1023 → 1080
      Chromosome_seg; Chromosome segregation during meiosis
      pfam13915
      Location:884 → 941
      DUF4210; Domain of unknown function (DUF4210)

    RNA

    1. XR_005487782.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools