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    Kiaa0408L Kiaa0408-like [ Rattus norvegicus (Norway rat) ]

    Gene ID: 292199, updated on 10-Jul-2024

    Summary

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    Official Symbol
    Kiaa0408Lprovided by RGD
    Official Full Name
    Kiaa0408-likeprovided by RGD
    Primary source
    RGD:1307525
    See related
    EnsemblRapid:ENSRNOG00000042309 AllianceGenome:RGD:1307525
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Soga3; Kiaa0408; RGD1307525; Rgd1310049
    Summary
    Orthologous to human KIAA0408 (KIAA0408). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Brain (RPKM 231.4), Muscle (RPKM 146.1) and 3 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Kiaa0408L in Genome Data Viewer
    Location:
    1p11
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (30444202..30469195, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (28615600..28630309, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (31040142..31055453, complement)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene liver enriched gene 1, pseudogene 1 Neighboring gene ADP-ribosylation factor 1, pseudogene 5 Neighboring gene MTCL family member 3 Neighboring gene small nucleolar RNA SNORA17

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Gene and alternative splicing annotation with AIR. Florea L, et al. Genome Res, 2005 Jan. PMID 15632090, Free PMC Article
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    uncharacterized protein KIAA0408 homolog
    Names
    SOGA family member 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001144859.2 → NP_001138331.2  uncharacterized protein KIAA0408 homolog

      See identical proteins and their annotated locations for NP_001138331.2

      Status: PROVISIONAL

      Source sequence(s)
      JAXUCZ010000001
      UniProtKB/TrEMBL
      A6JUT7, A6JUT8, D3ZYL2
      Related
      ENSRNOP00000035937.5, ENSRNOT00000031083.7
      Conserved Domains (1) summary
      pfam14818
      Location:15 → 147
      DUF4482; Domain of unknown function (DUF4482)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      30444202..30469195 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063282835.1 → XP_063138905.1  uncharacterized protein KIAA0408 homolog isoform X1

      UniProtKB/TrEMBL
      A6JUT7, A6JUT8, D3ZYL2

    2. XM_063282843.1 → XP_063138913.1  uncharacterized protein KIAA0408 homolog isoform X6

    3. XM_063282840.1 → XP_063138910.1  uncharacterized protein KIAA0408 homolog isoform X5

    4. XM_063282838.1 → XP_063138908.1  uncharacterized protein KIAA0408 homolog isoform X3

    5. XM_063282836.1 → XP_063138906.1  uncharacterized protein KIAA0408 homolog isoform X1

      UniProtKB/TrEMBL
      A6JUT7, A6JUT8, D3ZYL2

    6. XM_063282837.1 → XP_063138907.1  uncharacterized protein KIAA0408 homolog isoform X2

      UniProtKB/TrEMBL
      A6JUT8

    7. XM_039103346.2 → XP_038959274.1  uncharacterized protein KIAA0408 homolog isoform X4

    Nucleotide Protein Strain
    Heading Accession and Version

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