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    C13h2orf76 similar to chromosome 2 open reading frame 76 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 288978, updated on 17-Aug-2024

    Summary

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    Official Symbol
    C13h2orf76provided by RGD
    Official Full Name
    similar to chromosome 2 open reading frame 76provided by RGD
    Primary source
    RGD:1594584
    See related
    EnsemblRapid:ENSRNOG00000045570 AllianceGenome:RGD:1594584
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human C2orf76 (chromosome 2 open reading frame 76). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Liver (RPKM 62.5), Kidney (RPKM 41.3) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    13q11
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 13 NC_086031.1 (33801523..33889430)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 13 NC_051348.1 (31249733..31335367)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 13 NC_005112.4 (36155956..36244256)

    Chromosome 13 - NC_086031.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134481481 Neighboring gene secretin receptor Neighboring gene transmembrane protein 37 Neighboring gene diazepam binding inhibitor Neighboring gene STEAP3 metalloreductase Neighboring gene complement C1q like 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    UPF0538 protein C2orf76 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001134500.2 → NP_001127972.1  UPF0538 protein C2orf76 homolog isoform 2

      See identical proteins and their annotated locations for NP_001127972.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000013
      UniProtKB/TrEMBL
      A6K7Z3, M0R9J6
      Related
      ENSRNOP00000066166.2, ENSRNOT00000071437.3
      Conserved Domains (1) summary
      pfam10209
      Location:8 → 126
      DUF2340; Uncharacterized conserved protein (DUF2340)

    2. NM_001401154.1 → NP_001388083.1  UPF0538 protein C2orf76 homolog isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000013

    3. NM_001401155.1 → NP_001388084.1  UPF0538 protein C2orf76 homolog isoform 3

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000013

    4. NM_001401156.1 → NP_001388085.1  UPF0538 protein C2orf76 homolog isoform 4

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000013
      Related
      ENSRNOP00000112765.1, ENSRNOT00000164546.1

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086031.1 Reference GRCr8

      Range
      33801523..33889430
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008769433.3 → XP_008767655.2  UPF0538 protein C2orf76 homolog isoform X1

      Related
      ENSRNOP00000101956.1, ENSRNOT00000154454.1

    2. XM_039090418.2 → XP_038946346.1  UPF0538 protein C2orf76 homolog isoform X2

      Conserved Domains (1) summary
      pfam10209
      Location:12 → 94
      DUF2340; Uncharacterized conserved protein (DUF2340)

    RNA

    1. XR_010056902.1 RNA Sequence

    2. XR_010056903.1 RNA Sequence

    3. XR_010056904.1 RNA Sequence

    4. XR_005492206.2 RNA Sequence

    5. XR_010056905.1 RNA Sequence

    6. XR_010056906.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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