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    LINC02693 long intergenic non-protein coding RNA 2693 [ Homo sapiens (human) ]

    Gene ID: 339263, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC02693provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2693provided by HGNC
    Primary source
    HGNC:HGNC:27904
    See related
    Ensembl:ENSG00000212719 AllianceGenome:HGNC:27904
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    C17orf51
    Expression
    Broad expression in brain (RPKM 7.0), testis (RPKM 3.7) and 24 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See LINC02693 in Genome Data Viewer
    Location:
    17p11.2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (21528310..21551678, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (21477175..21500543, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (21431571..21454941, complement)

    Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:21408312-21409246 Neighboring gene ribosomal protein L21 pseudogene 120 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:21414933-21415554 Neighboring gene uncharacterized LOC105371589 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:21425539-21426039 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8321 Neighboring gene uncharacterized LOC124903953 Neighboring gene FERM domain containing kindlin 3 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Clone Names

    • FLJ12977, FLJ31874, FLJ33618, FLJ38937, FLJ41148

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_160801.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC233702, BC010612
      Related
      ENST00000647872.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

      Range
      21528310..21551678 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060941.1 Alternate T2T-CHM13v2.0

      Range
      21477175..21500543 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001113434.4: Suppressed sequence

      Description
      NM_001113434.4: This RefSeq was removed because it is now thought that this gene does not encode a protein.