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    LOC101927342 uncharacterized LOC101927342 [ Homo sapiens (human) ]

    Gene ID: 101927342, updated on 17-Sep-2024

    Summary

    Gene symbol
    LOC101927342
    Gene description
    uncharacterized LOC101927342
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 2.3) See more
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    Genomic context

    See LOC101927342 in Genome Data Viewer
    Location:
    1p31.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (76011324..76019356)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (75849268..75857299)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (76477009..76485041)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105378806 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1209 Neighboring gene ankyrin repeat and SOCS box containing 17 Neighboring gene uncharacterized LOC124904200 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr1:76518436-76518936 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 999 Neighboring gene ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1000 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:76696789-76697289 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr1:76699991-76700490 Neighboring gene Sharpr-MPRA regulatory region 8716 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:76745209-76745708 Neighboring gene NANOG hESC enhancer GRCh37_chr1:76768829-76769468 Neighboring gene peroxiredoxin 5 pseudogene

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Phenotypes

    EBI GWAS Catalog

    Description
    A genome-wide association study of Cloninger's temperament scales: implications for the evolutionary genetics of personality.
    EBI GWAS Catalog
    Genome-wide association and longitudinal analyses reveal genetic loci linking pubertal height growth, pubertal timing and childhood adiposity.
    EBI GWAS Catalog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_125939.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC092813

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      76011324..76019356
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      75849268..75857299
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)