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    LINC02412 long intergenic non-protein coding RNA 2412 [ Homo sapiens (human) ]

    Gene ID: 102724933, updated on 22-Oct-2024

    Summary

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    Official Symbol
    LINC02412provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2412provided by HGNC
    Primary source
    HGNC:HGNC:53341
    See related
    Ensembl:ENSG00000258171 AllianceGenome:HGNC:53341
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LINC02412 in Genome Data Viewer
    Location:
    12q22
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 12 NC_000012.12 (93174366..93181832)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 12 NC_060936.1 (93155204..93162668)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (93568142..93575608)

    Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC643339 Neighboring gene uncharacterized LOC105369908 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6762 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6763 Neighboring gene ReSE screen-validated silencer GRCh37_chr12:93535709-93535869 Neighboring gene NACA pseudogene 8 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr12:93561467-93562016 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6764 Neighboring gene MPRA-validated peak1892 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 6765 Neighboring gene MPRA-validated peak1893 silencer Neighboring gene small nucleolar RNA U13 Neighboring gene small nucleolar RNA SNORD74

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See Variation Viewer (GRCh37.p13)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_120492.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AA602992, AC138123, AI821790, CB049231, CB049232
      Related
      ENST00000755010.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000012.12 Reference GRCh38.p14 Primary Assembly

      Range
      93174366..93181832
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060936.1 Alternate T2T-CHM13v2.0

      Range
      93155204..93162668
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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