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    MT1IP metallothionein 1I, pseudogene [ Homo sapiens (human) ]

    Gene ID: 644314, updated on 22-Oct-2024

    Summary

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    Official Symbol
    MT1IPprovided by HGNC
    Official Full Name
    metallothionein 1I, pseudogeneprovided by HGNC
    Primary source
    HGNC:HGNC:7401
    See related
    Ensembl:ENSG00000290663 MIM:156355; AllianceGenome:HGNC:7401
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    MT1; MTE; MT1I
    Expression
    Low expression observed in reference dataset See more
    Orthologs
    all
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    Genomic context

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    See MT1IP in Genome Data Viewer
    Location:
    16q13
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (56676116..56677877)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (62471093..62472855)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (56710028..56711789)

    Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene metallothionein 1G Neighboring gene metallothionein 1H Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr16:56708581-56709252 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr16:56716235-56716766 Neighboring gene metallothionein 1X Neighboring gene developmental pluripotency associated 2 pseudogene 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Characterisation of six additional human metallothionein genes. Stennard FA, et al. Biochim Biophys Acta, 1994 Aug 2. PMID 8049263
    2. Human metallothionein genes are clustered on chromosome 16. Karin M, et al. Proc Natl Acad Sci U S A, 1984 Sep. PMID 6089206, Free PMC Article
    3. Human metallothionein genes: structure of the functional locus at 16q13. West AK, et al. Genomics, 1990 Nov. PMID 2286373
    4. PLEKHA4/kramer Attenuates Dishevelled Ubiquitination to Modulate Wnt and Planar Cell Polarity Signaling. Shami Shah A, et al. Cell Rep, 2019 May 14. PMID 31091453, Free PMC Article
    5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Other Names

    • metallothionein E

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_003669.2 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript.
      Source sequence(s)
      AF348997, BC144614
      Related
      ENST00000379816.6

    2. NR_104045.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the middle region and is shorter than variant 1.
      Source sequence(s)
      AF348997, BC144606

    3. NR_104046.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) lacks an internal exon, compared to variant 1.
      Source sequence(s)
      AF348997, BC171791
      Related
      ENST00000849293.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

      Range
      56676116..56677877
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060940.1 Alternate T2T-CHM13v2.0

      Range
      62471093..62472855
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_175621.2: Suppressed sequence

      Description
      NM_175621.2: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.