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    LINC01370 long intergenic non-protein coding RNA 1370 [ Homo sapiens (human) ]

    Gene ID: 100505663, updated on 22-Oct-2024

    Summary

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    Official Symbol
    LINC01370provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1370provided by HGNC
    Primary source
    HGNC:HGNC:50608
    See related
    Ensembl:ENSG00000237767 MIM:617038; AllianceGenome:HGNC:50608
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    HILNC25; HI-LNC25
    Expression
    Restricted expression toward liver (RPKM 8.9) See more
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    Genomic context

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    See LINC01370 in Genome Data Viewer
    Location:
    20q12
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (40004461..40008529)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (41735974..41740042)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (38633103..38637171)

    Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105372614 Neighboring gene uncharacterized LOC105372613 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr20:38428967-38430166 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 17879 Neighboring gene heat shock protein family E (Hsp10) member 1 pseudogene 1 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:38614432-38615135 Neighboring gene uncharacterized LOC105372616 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:38891152-38891652 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:38897457-38897988 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:38897989-38898520 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr20:38902777-38903308 Neighboring gene uncharacterized LOC105372617

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Human β cell transcriptome analysis uncovers lncRNAs that are tissue-specific, dynamically regulated, and abnormally expressed in type 2 diabetes. Morán I, et al. Cell Metab, 2012 Oct 3. PMID 23040067, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See Variation Viewer (GRCh37.p13)

    General gene information

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    Other Names

    • Human Islet Long Non Coding RNA 25

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_109936.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript.
      Source sequence(s)
      BI792917, CK821054
      Related
      ENST00000432633.2

    2. NR_109937.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate splice site compared to variant 1.
      Source sequence(s)
      BI792917, BQ417071, CK821054

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

      Range
      40004461..40008529
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060944.1 Alternate T2T-CHM13v2.0

      Range
      41735974..41740042
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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