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    Nudcd3 NudC domain containing 3 [ Mus musculus (house mouse) ]

    Gene ID: 209586, updated on 28-Oct-2024

    Summary

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    Official Symbol
    Nudcd3provided by MGI
    Official Full Name
    NudC domain containing 3provided by MGI
    Primary source
    MGI:MGI:2144158
    See related
    Ensembl:ENSMUSG00000053838 AllianceGenome:MGI:2144158
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    mKIAA1068
    Summary
    Predicted to enable unfolded protein binding activity. Predicted to be involved in protein folding. Predicted to be part of cytoplasmic dynein complex. Predicted to be active in cytoplasm. Orthologous to human NUDCD3 (NudC domain containing 3). [provided by Alliance of Genome Resources, Oct 2024]
    Expression
    Ubiquitous expression in cortex adult (RPKM 21.3), frontal lobe adult (RPKM 20.0) and 28 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See Nudcd3 in Genome Data Viewer
    Location:
    11 A1; 11 3.91 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (6055705..6150190, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (6105691..6201619, complement)

    Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E6947 Neighboring gene YKT6 v-SNARE homolog (S. cerevisiae) Neighboring gene calcium/calmodulin-dependent protein kinase II, beta Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:5900191-5900374 Neighboring gene STARR-positive B cell enhancer ABC_E11764 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:5917894-5918003 Neighboring gene STARR-seq mESC enhancer starr_28452 Neighboring gene STARR-seq mESC enhancer starr_28454 Neighboring gene ribosomal protein S15A, pseudogene 6 Neighboring gene STARR-positive B cell enhancer ABC_E10663 Neighboring gene CapStarr-seq enhancer MGSCv37_chr11:6100447-6100630 Neighboring gene NPC1 like intracellular cholesterol transporter 1 Neighboring gene predicted gene 11401

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. NUDCD3 deficiency disrupts V(D)J recombination to cause SCID and Omenn syndrome. Chen R, et al. Sci Immunol, 2024 May 24. PMID 38787962
    2. Identifying key m(6)A-methylated lncRNAs and genes associated with neural tube defects via integrative MeRIP and RNA sequencing analyses. Yang J, et al. Front Genet, 2022. PMID 36482889, Free PMC Article
    3. Prediction of the coding sequences of mouse homologues of KIAA gene: III. the complete nucleotide sequences of 500 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries. Okazaki N, et al. DNA Res, 2003 Aug 31. PMID 14621295
    4. BioID screening of biotinylation sites using the avidin-like protein Tamavidin 2-REV identifies global interactors of stimulator of interferon genes (STING). Motani K, et al. J Biol Chem, 2020 Aug 7. PMID 32554809, Free PMC Article
    5. A large-scale, gene-driven mutagenesis approach for the functional analysis of the mouse genome. Hansen J, et al. Proc Natl Acad Sci U S A, 2003 Aug 19. PMID 12904583, Free PMC Article

    See all (24) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Clone Names

    • KIAA1068

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables unfolded protein binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Process Evidence Code Pubs
    involved_in cilium assembly IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in protein folding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in protein localization to pericentriolar material IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of cytoplasmic dynein complex IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    nudC domain-containing protein 3

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001363446.2 → NP_001350375.1  nudC domain-containing protein 3 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AL607152, AL611926
      Conserved Domains (2) summary
      pfam14050
      Location:9 → 67
      Nudc_N; N-terminal conserved domain of Nudc
      cl00175
      Location:186 → 239
      alpha-crystallin-Hsps_p23-like; alpha-crystallin domain (ACD) found in alpha-crystallin-type small heat shock proteins, and a similar domain found in p23 (a cochaperone for Hsp90) and in other p23-like proteins.

    2. NM_001419325.1 → NP_001406254.1  nudC domain-containing protein 3 isoform 4

      Status: VALIDATED

      Source sequence(s)
      AL607152, AL611926
      Related
      ENSMUSP00000123108.2, ENSMUST00000135631.2

    3. NM_001419337.1 → NP_001406266.1  nudC domain-containing protein 3 isoform 3

      Status: VALIDATED

      Source sequence(s)
      AL607152, AL611926

    4. NM_173748.6 → NP_776109.1  nudC domain-containing protein 3 isoform 1

      See identical proteins and their annotated locations for NP_776109.1

      Status: VALIDATED

      Source sequence(s)
      AL607152, AL611926
      Consensus CDS
      CCDS24412.1
      UniProtKB/Swiss-Prot
      Q3TX16, Q5SVV6, Q5SVV7, Q6PFE4, Q6ZPZ2, Q8BL70, Q8BWN3, Q8BWW5, Q8R1N4
      UniProtKB/TrEMBL
      B0FTY3
      Related
      ENSMUSP00000064668.4, ENSMUST00000066496.10
      Conserved Domains (2) summary
      cd06495
      Location:186 → 287
      p23_NUDCD3_like; p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins. Little is known about the function of the proteins in this subgroup.
      pfam14050
      Location:9 → 67
      Nudc_N; N-terminal conserved domain of Nudc

    RNA

    1. NR_185059.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL607152, AL611926

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000077.7 Reference GRCm39 C57BL/6J

      Range
      6055705..6150190 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8R1N4.3 GenPept UniProtKB/Swiss-Prot:Q8R1N4

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
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