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    [ Saccharomyces cerevisiae S288C ]

    Gene ID: 850287, updated on 11-Sep-2024

    Summary

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    Primary source
    SGD:S000000580
    Locus tag
    YCL075W
    See related
    AllianceGenome:SGD:S000000580; FungiDB:YCL075W; VEuPathDB:YCL075W
    Gene type
    pseudo
    RefSeq status
    REVIEWED
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Summary
    Predicted to enable several functions, including DNA polymerase activity; peptidase activity; and ribonuclease activity. Predicted to be involved in transposition, RNA-mediated. Predicted to be located in retrotransposon nucleocapsid. [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

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    Location:
    chromosome: III
    Sequence:
    Chromosome: III; NC_001135.5 (2126..2566)

    Chromosome III - NC_001135.5Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene glutathione exchanger

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_001135.5

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence. Kim JM, et al. Genome Res, 1998 May. PMID 9582191
    2. The complete DNA sequence of yeast chromosome III. Oliver SG, et al. Nature, 1992 May 7. PMID 1574125
    3. The yeast SR-like protein Npl3 links chromatin modification to mRNA processing. Moehle EA, et al. PLoS Genet, 2012. PMID 23209445, Free PMC Article
    4. Functional wiring of the yeast kinome revealed by global analysis of genetic network motifs. Sharifpoor S, et al. Genome Res, 2012 Apr. PMID 22282571, Free PMC Article
    5. The genetic landscape of a cell. Costanzo M, et al. Science, 2010 Jan 22. PMID 20093466, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    • Pseudogene: encodes fragment of Ty Pol protein

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables DNA-directed DNA polymerase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables RNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables RNA nuclease activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables RNA-directed DNA polymerase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables peptidase activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in retrotransposition ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in retrotransposon nucleocapsid ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 

    Gene LinkOut

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    Other Literature Sources
    Research Materials