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    ANKRD20A5P ankyrin repeat domain 20 family member A5, pseudogene [ Homo sapiens (human) ]

    Gene ID: 440482, updated on 17-Sep-2024

    Summary

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    Official Symbol
    ANKRD20A5Pprovided by HGNC
    Official Full Name
    ankyrin repeat domain 20 family member A5, pseudogeneprovided by HGNC
    Primary source
    HGNC:HGNC:33833
    See related
    AllianceGenome:HGNC:33833
    Gene type
    pseudo
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    ANKRD20A5
    Expression
    Broad expression in testis (RPKM 3.5), esophagus (RPKM 1.7) and 15 other tissues See more
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    Genomic context

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    See ANKRD20A5P in Genome Data Viewer
    Location:
    18p11.21
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (14179097..14227050)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (14341967..14389945)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 18 NC_000018.9 (14179096..14227049)

    Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene protein phosphatase 6, regulatory subunit 2 pseudogene 1 Neighboring gene neurofibromin 1 pseudogene 5 Neighboring gene RNA, U6 small nuclear 316, pseudogene Neighboring gene ras homolog family member T1 pseudogene 1 Neighboring gene sorting nexin 18 pseudogene Neighboring gene cytochrome P450 family 4 subfamily F member 35, pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Systematic identification of pathological lamin A interactors. Dittmer TA, et al. Mol Biol Cell, 2014 May. PMID 24623722, Free PMC Article
    2. SUMOylation of DDX39A Alters Binding and Export of Antiviral Transcripts to Control Innate Immunity. Shi P, et al. J Immunol, 2020 Jul 1. PMID 32393512
    3. Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions. Suzuki Y, et al. Genome Res, 2004 Sep. PMID 15342556, Free PMC Article
    4. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
    5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Other Names

    • Putative ankyrin repeat domain-containing protein 20A-like protein MGC26718
    • ankyrin repeat domain-containing protein 20A-like protein MGC26718
    • putative ankyrin repeat domain-containing protein 20A5

    Clone Names

    • MGC26718

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_040113.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AP001004

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

      Range
      14179097..14227050
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060942.1 Alternate T2T-CHM13v2.0

      Range
      14341967..14389945
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001029999.3: Suppressed sequence

      Description
      NM_001029999.3: This RefSeq was permanently suppressed because the CDS is partial, and currently there is insufficient evidence to predict the full-length nature of the transcript.
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A0PJZ0.1 GenPept UniProtKB/Swiss-Prot:A0PJZ0

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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