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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001077693.4 → NP_001071161.1 endothelial cell-specific chemotaxis regulator isoform 1 precursor
See identical proteins and their annotated locations for NP_001071161.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes the longer isoform (1).
- Source sequence(s)
-
AI699314, EU025066
- Consensus CDS
-
CCDS75317.1
- UniProtKB/Swiss-Prot
- B4E3H7, C3RSF2, Q19T08
- Related
- ENSP00000479243.1, ENST00000618155.3
- Conserved Domains (1) summary
-
- pfam15820
Location:101 → 203
- ECSCR; Endothelial cell-specific chemotaxis regulator
-
NM_001293739.2 → NP_001280668.1 endothelial cell-specific chemotaxis regulator isoform 2 precursor
Status: REVIEWED
- Description
- Transcript Variant: This variant (2) uses an alternate splice site in the 3' terminal exon, compared to variant 1, resulting in an isoform (2) that has a distinct C-terminus and is 1 aa shorter than isoform 1.
- Source sequence(s)
-
AC142391, AC188049, AI699314, BI834795, EU025066
- UniProtKB/Swiss-Prot
-
Q19T08
- Conserved Domains (1) summary
-
- pfam15820
Location:101 → 203
- ECSCR; Endothelial cell-specific chemotaxis regulator
RNA
-
NR_121659.2 RNA Sequence
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) contains an additional internal exon and uses an alternate splice site in the 3' terminal exon, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
- Source sequence(s)
-
ABBA01026462, AC142391, AI699314, BF526332, EU025066
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000005.10 Reference GRCh38.p14 Primary Assembly
- Range
-
139448560..139462743 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Reference GRCh38.p14 PATCHES
Genomic
-
NW_021159996.1 Reference GRCh38.p14 PATCHES
- Range
-
39089..52538 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
Alternate T2T-CHM13v2.0
Genomic
-
NC_060929.1 Alternate T2T-CHM13v2.0
- Range
-
139974387..139987818 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)