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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
Genomic
-
NG_029694.1 RefSeqGene
- Range
-
5013..15009
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
NM_001174100.2 → NP_001167571.1 poly(rC)-binding protein 4 isoform c
See identical proteins and their annotated locations for NP_001167571.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (5) differs in the 5' UTR, and includes an additional in-frame exon in the central coding region, compared to variant 1. The encoded isoform (c) is longer than isoform a. Variants 3, 4 and 5 encode the same isoform.
- Source sequence(s)
-
AC115284, AK225815, DA074216
- Consensus CDS
-
CCDS2839.1
- UniProtKB/Swiss-Prot
- P57723, Q96AH7
- UniProtKB/TrEMBL
- A0A024R304, Q9HCU2
- Related
- ENSP00000417196.1, ENST00000461554.6
- Conserved Domains (2) summary
-
- cd02396
Location:103 → 167
- PCBP_like_KH; K homology RNA-binding domain, PCBP_like. Members of this group possess KH domains in a tandem arrangement. Most members, similar to the poly(C) binding proteins (PCBPs) and Nova, containing three KH domains, with the first and second domains, which are ...
- pfam00013
Location:243 → 307
- KH_1; KH domain
-
NM_001363885.1 → NP_001350814.1 poly(rC)-binding protein 4 isoform d
Status: REVIEWED
- Description
- Transcript Variant: This variant (6) contains an alternate in-frame exon and differs in the 3' UTR and coding sequence compared to variant 1. The resulting isoform (d) contains an alternate internal segment and has a shorter and distinct C-terminus compared to isoform a.
- Source sequence(s)
-
AC115284
- Consensus CDS
-
CCDS87085.1
- UniProtKB/TrEMBL
-
C9J0A4
- Related
- ENSP00000418925.1, ENST00000471622.5
- Conserved Domains (2) summary
-
- cd02396
Location:103 → 167
- PCBP_like_KH; K homology RNA-binding domain, PCBP_like. Members of this group possess KH domains in a tandem arrangement. Most members, similar to the poly(C) binding proteins (PCBPs) and Nova, containing three KH domains, with the first and second domains, which are ...
- pfam00013
Location:243 → 307
- KH_1; KH domain
-
NM_020418.4 → NP_065151.2 poly(rC)-binding protein 4 isoform a
See identical proteins and their annotated locations for NP_065151.2
Status: REVIEWED
- Description
- Transcript Variant: This variant (1) encodes the shorter isoform (a). The 5' UTR may be incomplete due to lack of 5'-complete transcript support for this variant, and the presence of alternative splicing choices further upstream.
- Source sequence(s)
-
AC115284, BC017098, DA701799
- Consensus CDS
-
CCDS2840.2
- UniProtKB/TrEMBL
- A0A024R304, Q9HCU2
- Related
- ENSP00000395030.2, ENST00000428823.6
- Conserved Domains (3) summary
-
- cd02396
Location:19 → 80
- PCBP_like_KH; K homology RNA-binding domain, PCBP_like. Members of this group possess KH domains in a tandem arrangement. Most members, similar to the poly(C) binding proteins (PCBPs) and Nova, containing three KH domains, with the first and second domains, which are ...
- pfam00013
Location:200 → 264
- KH_1; KH domain
- cl00098
Location:103 → 137
- KH-I; K homology RNA-binding domain, type I. KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA. There are two different KH domains that ...
-
NM_033008.3 → NP_127501.1 poly(rC)-binding protein 4 isoform c
See identical proteins and their annotated locations for NP_127501.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (3) differs in the 5' UTR, and includes an additional in-frame exon in the central coding region, compared to variant 1. The encoded isoform (c) is longer than isoform a. Variants 3, 4 and 5 encode the same isoform.
- Source sequence(s)
-
AK023993, BU684420, DA074216
- Consensus CDS
-
CCDS2839.1
- UniProtKB/Swiss-Prot
- P57723, Q96AH7
- UniProtKB/TrEMBL
- A0A024R304, Q9HCU2
- Related
- ENSP00000348111.2, ENST00000355852.6
- Conserved Domains (2) summary
-
- cd02396
Location:103 → 167
- PCBP_like_KH; K homology RNA-binding domain, PCBP_like. Members of this group possess KH domains in a tandem arrangement. Most members, similar to the poly(C) binding proteins (PCBPs) and Nova, containing three KH domains, with the first and second domains, which are ...
- pfam00013
Location:243 → 307
- KH_1; KH domain
-
NM_033010.2 → NP_127503.1 poly(rC)-binding protein 4 isoform c
See identical proteins and their annotated locations for NP_127503.1
Status: REVIEWED
- Description
- Transcript Variant: This variant (4) differs in the 5' UTR, and includes an additional in-frame exon in the central coding region, compared to variant 1. The 5' UTR may be incomplete due to lack of 5'-complete transcript support for this variant, and the presence of alternative splicing choices further upstream. The encoded isoform (c) is longer than isoform a. Variants 3, 4 and 5 encode the same isoform.
- Source sequence(s)
-
AF176330, BU684420
- Consensus CDS
-
CCDS2839.1
- UniProtKB/Swiss-Prot
- P57723, Q96AH7
- UniProtKB/TrEMBL
- A0A024R304, Q9HCU2
- Related
- ENSP00000322341.7, ENST00000322099.11
- Conserved Domains (2) summary
-
- cd02396
Location:103 → 167
- PCBP_like_KH; K homology RNA-binding domain, PCBP_like. Members of this group possess KH domains in a tandem arrangement. Most members, similar to the poly(C) binding proteins (PCBPs) and Nova, containing three KH domains, with the first and second domains, which are ...
- pfam00013
Location:243 → 307
- KH_1; KH domain
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCh38.p14 Primary Assembly
Genomic
-
NC_000003.12 Reference GRCh38.p14 Primary Assembly
- Range
-
51957454..51967466 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_047448612.1 → XP_047304568.1 poly(rC)-binding protein 4 isoform X1
-
XM_005265331.4 → XP_005265388.1 poly(rC)-binding protein 4 isoform X2
See identical proteins and their annotated locations for XP_005265388.1
- UniProtKB/Swiss-Prot
- P57723, Q96AH7
- UniProtKB/TrEMBL
- A0A024R304, Q9HCU2
- Conserved Domains (2) summary
-
- cd02396
Location:103 → 167
- PCBP_like_KH; K homology RNA-binding domain, PCBP_like. Members of this group possess KH domains in a tandem arrangement. Most members, similar to the poly(C) binding proteins (PCBPs) and Nova, containing three KH domains, with the first and second domains, which are ...
- pfam00013
Location:243 → 307
- KH_1; KH domain
-
XM_047448614.1 → XP_047304570.1 poly(rC)-binding protein 4 isoform X1
-
XM_047448615.1 → XP_047304571.1 poly(rC)-binding protein 4 isoform X1
-
XM_047448616.1 → XP_047304572.1 poly(rC)-binding protein 4 isoform X1
-
XM_047448617.1 → XP_047304573.1 poly(rC)-binding protein 4 isoform X2
- UniProtKB/Swiss-Prot
- P57723, Q96AH7
-
XM_047448613.1 → XP_047304569.1 poly(rC)-binding protein 4 isoform X1
-
XM_047448618.1 → XP_047304574.1 poly(rC)-binding protein 4 isoform X2
- UniProtKB/Swiss-Prot
- P57723, Q96AH7
-
XM_047448622.1 → XP_047304578.1 poly(rC)-binding protein 4 isoform X2
- UniProtKB/Swiss-Prot
- P57723, Q96AH7
-
XM_006713269.2 → XP_006713332.1 poly(rC)-binding protein 4 isoform X2
See identical proteins and their annotated locations for XP_006713332.1
- UniProtKB/Swiss-Prot
- P57723, Q96AH7
- UniProtKB/TrEMBL
- A0A024R304, Q9HCU2
- Conserved Domains (2) summary
-
- cd02396
Location:103 → 167
- PCBP_like_KH; K homology RNA-binding domain, PCBP_like. Members of this group possess KH domains in a tandem arrangement. Most members, similar to the poly(C) binding proteins (PCBPs) and Nova, containing three KH domains, with the first and second domains, which are ...
- pfam00013
Location:243 → 307
- KH_1; KH domain
-
XM_047448621.1 → XP_047304577.1 poly(rC)-binding protein 4 isoform X5
-
XM_047448619.1 → XP_047304575.1 poly(rC)-binding protein 4 isoform X3
-
XM_047448620.1 → XP_047304576.1 poly(rC)-binding protein 4 isoform X4
Alternate T2T-CHM13v2.0
Genomic
-
NC_060927.1 Alternate T2T-CHM13v2.0
- Range
-
51990373..52000385 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_054347332.1 → XP_054203307.1 poly(rC)-binding protein 4 isoform X1
-
XM_054347337.1 → XP_054203312.1 poly(rC)-binding protein 4 isoform X2
- UniProtKB/Swiss-Prot
- P57723, Q96AH7
-
XM_054347334.1 → XP_054203309.1 poly(rC)-binding protein 4 isoform X1
-
XM_054347335.1 → XP_054203310.1 poly(rC)-binding protein 4 isoform X1
-
XM_054347336.1 → XP_054203311.1 poly(rC)-binding protein 4 isoform X1
-
XM_054347339.1 → XP_054203314.1 poly(rC)-binding protein 4 isoform X2
- UniProtKB/Swiss-Prot
- P57723, Q96AH7
-
XM_054347333.1 → XP_054203308.1 poly(rC)-binding protein 4 isoform X1
-
XM_054347340.1 → XP_054203315.1 poly(rC)-binding protein 4 isoform X2
- UniProtKB/Swiss-Prot
- P57723, Q96AH7
-
XM_054347344.1 → XP_054203319.1 poly(rC)-binding protein 4 isoform X2
- UniProtKB/Swiss-Prot
- P57723, Q96AH7
-
XM_054347338.1 → XP_054203313.1 poly(rC)-binding protein 4 isoform X2
- UniProtKB/Swiss-Prot
- P57723, Q96AH7
-
XM_054347343.1 → XP_054203318.1 poly(rC)-binding protein 4 isoform X5
-
XM_054347341.1 → XP_054203316.1 poly(rC)-binding protein 4 isoform X3
-
XM_054347342.1 → XP_054203317.1 poly(rC)-binding protein 4 isoform X4
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NM_033009.1: Suppressed sequence
- Description
- NM_033009.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein, and the transcript retains intronic sequences.