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    Troap trophinin associated protein [ Rattus norvegicus (Norway rat) ]

    Gene ID: 300219, updated on 2-Nov-2024

    Summary

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    Official Symbol
    Troapprovided by RGD
    Official Full Name
    trophinin associated proteinprovided by RGD
    Primary source
    RGD:1306870
    See related
    EnsemblRapid:ENSRNOG00000060703 AllianceGenome:RGD:1306870
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human TROAP (trophinin associated protein). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Thymus (RPKM 52.4), Spleen (RPKM 32.5) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Troap in Genome Data Viewer
    Location:
    7q36
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 7 NC_086025.1 (132111892..132121296)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (130233534..130242369)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (140758576..140766423)

    Chromosome 7 - NC_086025.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102546594 Neighboring gene peripherin Neighboring gene complement C1q like 4 Neighboring gene DnaJ heat shock protein family (Hsp40) member C22

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    tastin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001271243.1 → NP_001258172.1  tastin

      See identical proteins and their annotated locations for NP_001258172.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000007
      UniProtKB/TrEMBL
      A6KCD9, D3ZLZ9
      Related
      ENSRNOP00000071862.1, ENSRNOT00000089448.3
      Conserved Domains (1) summary
      PHA03247
      Location:430 → 638
      PHA03247; large tegument protein UL36; Provisional

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086025.1 Reference GRCr8

      Range
      132111892..132121296
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006257348.5 → XP_006257410.1  tastin isoform X1

      UniProtKB/TrEMBL
      A0A8I6ARF8
      Related
      ENSRNOP00000097449.1, ENSRNOT00000112650.2
      Conserved Domains (1) summary
      PHA03247
      Location:200 → 592
      PHA03247; large tegument protein UL36; Provisional

    2. XM_039078927.2 → XP_038934855.1  tastin isoform X2

      Conserved Domains (1) summary
      PHA03247
      Location:93 → 392
      PHA03247; large tegument protein UL36; Provisional

    RNA

    1. XR_005486593.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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