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    Ankrd45 ankyrin repeat domain 45 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 289152, updated on 2-Nov-2024

    Summary

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    Symbol
    Ankrd45provided by RGD
    Full Name
    ankyrin repeat domain 45provided by RGD
    Primary source
    RGD:1311153
    See related
    EnsemblRapid:ENSRNOG00000002890 AllianceGenome:RGD:1311153
    Gene type
    protein coding
    RefSeq status
    INFERRED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1311153
    Summary
    Predicted to be involved in cell population proliferation. Predicted to be located in cleavage furrow; cytoplasm; and midbody. Orthologous to human ANKRD45 (ankyrin repeat domain 45). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Brain (RPKM 53.4), Adrenal (RPKM 26.2) and 7 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Ankrd45 in Genome Data Viewer
    Location:
    13q22
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 13 NC_086031.1 (75957047..75984868)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 13 NC_051348.1 (73424766..73450466)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 13 NC_005112.4 (78973578..79000356)

    Chromosome 13 - NC_086031.1Genomic Context describing neighboring genes Neighboring gene ribosomal protein S10-like Neighboring gene kelch-like family member 20 Neighboring gene uncharacterized LOC134481580 Neighboring gene Cytochrome c oxidase subunit 7C, pseudogene 1 Neighboring gene testis expressed 50 Neighboring gene solute carrier family 9, member C2 (putative) Neighboring gene uncharacterized LOC102552207 Neighboring gene peroxiredoxin 6 Neighboring gene actin, gamma 1, pseudogene 4

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in cell population proliferation ISO
    Inferred from Sequence Orthology
    more info
    		  
    Component Evidence Code Pubs
    located_in cleavage furrow ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in midbody ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    ankyrin repeat domain-containing protein 45

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402391.1 → NP_001389320.1  ankyrin repeat domain-containing protein 45

      Status: INFERRED

      Source sequence(s)
      JAXUCZ010000013
      UniProtKB/TrEMBL
      A0A8I6AKU5

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086031.1 Reference GRCr8

      Range
      75957047..75984868
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063272105.1 → XP_063128175.1  ankyrin repeat domain-containing protein 45 isoform X1

    2. XM_063272107.1 → XP_063128177.1  ankyrin repeat domain-containing protein 45 isoform X2

    3. XM_063272113.1 → XP_063128183.1  ankyrin repeat domain-containing protein 45 isoform X4

    4. XM_063272112.1 → XP_063128182.1  ankyrin repeat domain-containing protein 45 isoform X3

    5. XM_063272114.1 → XP_063128184.1  ankyrin repeat domain-containing protein 45 isoform X5

      Related
      ENSRNOP00000078428.2, ENSRNOT00000110150.2

    6. XM_063272110.1 → XP_063128180.1  ankyrin repeat domain-containing protein 45 isoform X2

    7. XM_063272115.1 → XP_063128185.1  ankyrin repeat domain-containing protein 45 isoform X6

      UniProtKB/TrEMBL
      A0A8I6AKU5
      Related
      ENSRNOP00000091058.2, ENSRNOT00000107362.2

    8. XM_063272108.1 → XP_063128178.1  ankyrin repeat domain-containing protein 45 isoform X2

      Related
      ENSRNOP00000095931.2, ENSRNOT00000104700.2

    9. XM_063272106.1 → XP_063128176.1  ankyrin repeat domain-containing protein 45 isoform X2

    10. XM_063272111.1 → XP_063128181.1  ankyrin repeat domain-containing protein 45 isoform X2

    11. XM_063272109.1 → XP_063128179.1  ankyrin repeat domain-containing protein 45 isoform X2

    Nucleotide Protein Strain
    Heading Accession and Version

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