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    Ccdc191 coiled-coil domain containing 191 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 288106, updated on 10-Oct-2024

    Summary

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    Official Symbol
    Ccdc191provided by RGD
    Official Full Name
    coiled-coil domain containing 191provided by RGD
    Primary source
    RGD:1566314
    See related
    EnsemblRapid:ENSRNOG00000057815 AllianceGenome:RGD:1566314
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1566314
    Summary
    Orthologous to human CCDC191 (coiled-coil domain containing 191). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Biased expression in Testes (RPKM 52.6), Kidney (RPKM 24.8) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Ccdc191 in Genome Data Viewer
    Location:
    11q21
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 11 NC_086029.1 (70241562..70312288, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 11 NC_051346.1 (56735655..56806372, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 11 NC_005110.4 (61678138..61748773, complement)

    Chromosome 11 - NC_086029.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134481070 Neighboring gene GRAM domain containing 1C Neighboring gene zinc finger DHHC-type palmitoyltransferase 23 Neighboring gene small nucleolar RNA, H/ACA box 84 Neighboring gene queuine tRNA-ribosyltransferase accessory subunit 2 Neighboring gene uncharacterized LOC134480927

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    coiled-coil domain-containing protein 191
    Names
    queuine tRNA-ribosyltransferase domain containing 1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001427765.1 → NP_001414694.1  coiled-coil domain-containing protein 191

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000011
      Related
      ENSRNOP00000076188.2, ENSRNOT00000093431.3

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086029.1 Reference GRCr8

      Range
      70241562..70312288 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008768763.4 → XP_008766985.1  coiled-coil domain-containing protein 191 isoform X1

      See identical proteins and their annotated locations for XP_008766985.1

      UniProtKB/TrEMBL
      A0A0G2JUG8, A0A1W2Q6A6
      Related
      ENSRNOP00000069093.1, ENSRNOT00000078879.3
      Conserved Domains (3) summary
      pfam02463
      Location:194 → 834
      SMC_N; RecF/RecN/SMC N terminal domain
      cd16269
      Location:789 → 800
      GBP_C; coiled coil [structural motif]
      cl20817
      Location:710 → 808
      GBP_C; Guanylate-binding protein, C-terminal domain

    2. XM_039088899.1 → XP_038944827.1  coiled-coil domain-containing protein 191 isoform X3

      UniProtKB/TrEMBL
      A6IR20
      Conserved Domains (3) summary
      PTZ00121
      Location:373 → 496
      PTZ00121; MAEBL; Provisional
      COG4942
      Location:271 → 455
      EnvC; Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB [Cell cycle control, cell division, chromosome partitioning]
      pfam08457
      Location:465 → 617
      Sfi1; Sfi1 spindle body protein

    3. XM_039088898.2 → XP_038944826.1  coiled-coil domain-containing protein 191 isoform X2

      Conserved Domains (2) summary
      PTZ00121
      Location:225 → 771
      PTZ00121; MAEBL; Provisional
      pfam17380
      Location:228 → 440
      DUF5401; Family of unknown function (DUF5401)

    RNA

    1. XR_005491341.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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