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    R119.3 DeHydrogenases, Short chain [ Caenorhabditis elegans ]

    Gene ID: 171628, updated on 2-Nov-2024

    Summary

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    Official Symbol
    R119.3
    Official Full Name
    DeHydrogenases, Short chain
    Primary source
    WormBase:WBGene00020089
    Locus tag
    CELE_R119.3
    See related
    AllianceGenome:WB:WBGene00020089
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
    Summary
    Located in mitochondrion. [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See R119.3 in Genome Data Viewer
    Location:
    chromosome: I
    Exon count:
    5
    Sequence:
    Chromosome: I; NC_003279.8 (373571..379073, complement)

    Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene RRM domain-containing protein Neighboring gene Aminopeptidase P N-terminal domain-containing protein Neighboring gene Prion-like (glutamine/asparagine-rich) domain bearing protein pqn-59 Neighboring gene Transcription initiation factor TFIID subunit 4 Neighboring gene Protein-L-isoaspartate O-methyltransferase domain-containing protein 1 Neighboring gene ubiquitinyl hydrolase 1 Neighboring gene WD_REPEATS_REGION domain-containing protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003279.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Determining the sub-cellular localization of proteins within Caenorhabditis elegans body wall muscle. Meissner B, et al. PLoS One, 2011. PMID 21611156, Free PMC Article
    2. In Vivo Interaction Proteomics in Caenorhabditis elegans Embryos Provides New Insights into P Granule Dynamics. Chen JX, et al. Mol Cell Proteomics, 2016 May. PMID 26912668, Free PMC Article
    3. SIN-3 acts in distinct complexes to regulate the germline transcriptional program in Caenorhabditis elegans. Robert VJ, et al. Development, 2023 Nov 1. PMID 37818613, Free PMC Article
    4. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
    5. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by WormBase

    Component Evidence Code Pubs
    located_in mitochondrion HDA PubMed 

    General protein information

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    Preferred Names
    DeHydrogenases, Short chain
    NP_490726.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003279.8 Reference assembly

      Range
      373571..379073 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_058325.9 → NP_490726.1  DeHydrogenases, Short chain [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_490726.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      O61709
      Conserved Domains (2) summary
      cd05233
      Location:4 → 241
      SDR_c; classical (c) SDRs
      PRK05557
      Location:4 → 249
      fabG; 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
    Nucleotide Protein
    Heading Accession and Version

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