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    LINC00051 long intergenic non-protein coding RNA 51 [ Homo sapiens (human) ]

    Gene ID: 619434, updated on 17-Sep-2024

    Summary

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    Official Symbol
    LINC00051provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 51provided by HGNC
    Primary source
    HGNC:HGNC:32028
    See related
    Ensembl:ENSG00000254008 AllianceGenome:HGNC:32028
    Gene type
    ncRNA
    RefSeq status
    PREDICTED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    C8orf43; NCRNA00051
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    See LINC00051 in Genome Data Viewer
    Location:
    8q24.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 8 NC_000008.11 (142198356..142209003)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 8 NC_060932.1 (143338191..143348794)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (143279717..143290364)

    Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105375792 Neighboring gene microRNA 4472-1 Neighboring gene Sharpr-MPRA regulatory region 1162 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:143283162-143283882 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:143284603-143285322 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:143300684-143301572 Neighboring gene t-SNARE domain containing 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:143341408-143341908 Neighboring gene RNA, 7SL, cytoplasmic 260, pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:143375399-143375900 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28057 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28058 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28059 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:143419370-143420072 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:143424933-143425449 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:143425450-143425965 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:143436639-143437406 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:143441158-143441658 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28060 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28061 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 28062 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:143458238-143458812 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:143457662-143458237 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:143477973-143478474 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19594 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:143484673-143485448 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:143491197-143491875 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:143497207-143498198 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:143498199-143499188 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:143508526-143509300 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr8:143515169-143515669 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19597 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19598 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:143534525-143535456 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:143535457-143536388 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:143545037-143545542 Neighboring gene uncharacterized LOC124902075 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:143550893-143551634 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:143551635-143552376 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr8:143553119-143553858 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 19599 Neighboring gene adhesion G protein-coupled receptor B1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_024378.1 RNA Sequence

      Status: PREDICTED

      Source sequence(s)
      BC008253
      Related
      ENST00000517704.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000008.11 Reference GRCh38.p14 Primary Assembly

      Range
      142198356..142209003
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060932.1 Alternate T2T-CHM13v2.0

      Range
      143338191..143348794
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
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    Research Materials