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    CCDC163 CCDC163 homolog [ Homo sapiens (human) ]

    Gene ID: 126661, updated on 2-Nov-2024

    Summary

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    Official Symbol
    CCDC163provided by HGNC
    Official Full Name
    CCDC163 homologprovided by HGNC
    Primary source
    HGNC:HGNC:27003
    See related
    Ensembl:ENSG00000280670 AllianceGenome:HGNC:27003
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    C1orf231; CCDC163P
    Summary
    Predicted to be located in membrane. [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Ubiquitous expression in thyroid (RPKM 2.5), brain (RPKM 1.4) and 25 other tissues See more
    Orthologs
    mouse all
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    Genomic context

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    See CCDC163 in Genome Data Viewer
    Location:
    1p34.1
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (45493866..45500073, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (45365450..45372440, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (45959538..45965745, complement)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124904849 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 967 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 968 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:45826137-45826636 Neighboring gene testis associated actin remodelling kinase 2 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:45856236-45856736 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 969 Neighboring gene peptidylprolyl isomerase A pseudogene 36 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:45909108-45909337 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 829 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 970 Neighboring gene Sharpr-MPRA regulatory region 45 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:45965685-45966217 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 972 Neighboring gene metabolism of cobalamin associated C Neighboring gene ReSE screen-validated silencer GRCh37_chr1:45986750-45986912 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 973 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:45992726-45993234 Neighboring gene peroxiredoxin 1 Neighboring gene high mobility group box 1 pseudogene 48

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Comparative analysis of an unusual gene arrangement in the human chromosome 1. Makałowska I. Gene, 2008 Nov 1. PMID 18672041
    2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by GOA

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    transmembrane protein CCDC163
    Names
    coiled-coil domain containing 163, pseudogene
    coiled-coil domain-containing protein 163

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001102601.3 → NP_001096071.1  transmembrane protein CCDC163 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AL451136, BC101256, DC421969
      UniProtKB/Swiss-Prot
      A0A0D9SF12
      Related
      ENSP00000486197.1, ENST00000629482.3

    2. NM_001358406.2 → NP_001345335.1  transmembrane protein CCDC163 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AL451136, BC113060, DC421969
      Consensus CDS
      CCDS85969.1
      UniProtKB/TrEMBL
      A0A0D9SG11, B4DV03
      Related
      ENSP00000487061.1, ENST00000626657.2

    3. NM_001358407.2 → NP_001345336.1  transmembrane protein CCDC163 isoform 3

      Status: VALIDATED

      Source sequence(s)
      AL451136

    RNA

    1. NR_033297.3 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK054714, AL451136
      Related
      ENST00000625766.2

    2. NR_033298.3 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript.
      Source sequence(s)
      AL451136, BC101257
      Related
      ENST00000626177.2

    3. NR_152411.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL451136

    4. NR_152412.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL451136

    5. NR_152413.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL451136

    6. NR_152414.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL451136, BC113061, DC421969

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      45493866..45500073 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_024453044.2 → XP_024308812.1  transmembrane protein CCDC163 isoform X1

    2. XM_024453045.2 → XP_024308813.1  transmembrane protein CCDC163 isoform X2

    3. XM_047444595.1 → XP_047300551.1  transmembrane protein CCDC163 isoform X3

    4. XM_047444605.1 → XP_047300561.1  transmembrane protein CCDC163 isoform X4

      Related
      ENST00000628397.2

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      45365450..45372440 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054334227.1 → XP_054190202.1  transmembrane protein CCDC163 isoform X1

    2. XM_054334228.1 → XP_054190203.1  transmembrane protein CCDC163 isoform X2

    3. XM_054334229.1 → XP_054190204.1  transmembrane protein CCDC163 isoform X3

    4. XM_054334230.1 → XP_054190205.1  transmembrane protein CCDC163 isoform X4

    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    A0A0D9SF12.1 GenPept UniProtKB/Swiss-Prot:A0A0D9SF12

    Gene LinkOut

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