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    LINC00470 long intergenic non-protein coding RNA 470 [ Homo sapiens (human) ]

    Gene ID: 56651, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC00470provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 470provided by HGNC
    Primary source
    HGNC:HGNC:1225
    See related
    AllianceGenome:HGNC:1225
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    C18orf2
    Expression
    Biased expression in testis (RPKM 1.4), placenta (RPKM 1.0) and 1 other tissue See more
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    Genomic context

    See LINC00470 in Genome Data Viewer
    Location:
    18p11.32
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 18 NC_000018.10 (1268311..1359629, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 18 NC_060942.1 (1422813..1514125, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 18 NC_000018.9 (1268312..1359630, complement)

    Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105371953 Neighboring gene solute carrier family 25 member 3 pseudogene 3 Neighboring gene Sharpr-MPRA regulatory region 5202 Neighboring gene cytochrome c oxidase subunit 6C pseudogene 3 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr18:1208318-1209041 Neighboring gene MPRA-validated peak3040 silencer Neighboring gene RN7SK pseudogene 72 Neighboring gene ATPase family AAA domain containing 1 pseudogene Neighboring gene uncharacterized LOC105371954 Neighboring gene ReSE screen-validated silencer GRCh37_chr18:1369016-1369234 Neighboring gene uncharacterized LOC105371960

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_023925.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript.
      Source sequence(s)
      AF295725, AF295730, AK057505, AP000829
    2. NR_023926.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) lacks an internal exon and uses an alternate splice site, compared to variant 1.
      Source sequence(s)
      AF295725, AF295726, AF295730, AK057505, AP000829
    3. NR_023927.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) lacks internal exons, compared to variant 1.
      Source sequence(s)
      AF295730, AK057505, AP000829
    4. NR_110327.1 RNA Sequence

      Status: VALIDATED

      Description
      Transcript Variant: This variant (4) lacks internal exons, compared to variant 1.
      Source sequence(s)
      AP000829, AP005119

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000018.10 Reference GRCh38.p14 Primary Assembly

      Range
      1268311..1359629 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060942.1 Alternate T2T-CHM13v2.0

      Range
      1422813..1514125 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_031416.2: Suppressed sequence

      Description
      NM_031416.2: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.