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    OCA5 Oca5p [ Saccharomyces cerevisiae S288C ]

    Gene ID: 856356, updated on 28-Oct-2024

    Summary

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    Official Symbol
    OCA5
    Official Full Name
    Oca5p
    Primary source
    SGD:S000001021
    Locus tag
    YHL029C
    See related
    AllianceGenome:SGD:S000001021; FungiDB:YHL029C; VEuPathDB:YHL029C
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Summary
    Located in cytoplasm. [provided by Alliance of Genome Resources, Oct 2024]
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    Genomic context

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    See OCA5 in Genome Data Viewer
    Location:
    chromosome: VIII
    Exon count:
    1
    Sequence:
    Chromosome: VIII; NC_001140.6 (45929..47968, complement)

    Chromosome VIII - NC_001140.6Genomic Context describing neighboring genes Neighboring gene Gos1p Neighboring gene Ecm29p Neighboring gene Wsc4p Neighboring gene alkaline-responsive transcriptional regulator RIM101

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_001140.6

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A complex-based reconstruction of the Saccharomyces cerevisiae interactome. Wang H, et al. Mol Cell Proteomics, 2009 Jun. PMID 19176519, Free PMC Article
    2. Computational analyses of TBC protein family in eukaryotes. Gao X, et al. Protein Pept Lett, 2008. PMID 18537741
    3. Systematic, genome-wide identification of host genes affecting replication of a positive-strand RNA virus. Kushner DB, et al. Proc Natl Acad Sci U S A, 2003 Dec 23. PMID 14671320, Free PMC Article
    4. The SUN protein Mps3 is required for spindle pole body insertion into the nuclear membrane and nuclear envelope homeostasis. Friederichs JM, et al. PLoS Genet, 2011 Nov. PMID 22125491, Free PMC Article
    5. Reverse recruitment: the Nup84 nuclear pore subcomplex mediates Rap1/Gcr1/Gcr2 transcriptional activation. Menon BB, et al. Proc Natl Acad Sci U S A, 2005 Apr 19. PMID 15817685, Free PMC Article

    See all (45) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm HDA PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    Oca5p
    NP_011834.1
    • Cytoplasmic protein required for replication of Brome mosaic virus; S. cerevisiae is a model system for studying replication of positive-strand RNA viruses in their natural hosts

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001140.6 Reference assembly

      Range
      45929..47968 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001179109.1 → NP_011834.1  TPA: Oca5p [Saccharomyces cerevisiae S288C]

      See identical proteins and their annotated locations for NP_011834.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A6ZSM1, B3LS90, B5VJQ0, C7GIQ7, C8ZA35, D3DKT9, P38738
      UniProtKB/TrEMBL
      N1P9E3
      Conserved Domains (1) summary
      cl02495
      Location:48 → 215
      RabGAP-TBC; Rab-GTPase-TBC domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P38738.1

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