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    RPS4B ribosomal 40S subunit protein S4B [ Saccharomyces cerevisiae S288C ]

    Gene ID: 856610, updated on 3-Nov-2024

    Summary

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    Official Symbol
    RPS4B
    Official Full Name
    ribosomal 40S subunit protein S4B
    Primary source
    SGD:S000001246
    Locus tag
    YHR203C
    See related
    AllianceGenome:SGD:S000001246; FungiDB:YHR203C; VEuPathDB:YHR203C
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Summary
    A structural constituent of ribosome. Predicted to be involved in translation. Part of cytosolic small ribosomal subunit. Orthologous to human RPS4X (ribosomal protein S4 X-linked); RPS4Y1 (ribosomal protein S4 Y-linked 1); and RPS4Y2 (ribosomal protein S4 Y-linked 2). [provided by Alliance of Genome Resources, Nov 2024]
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    Genomic context

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    See RPS4B in Genome Data Viewer
    Location:
    chromosome: VIII
    Exon count:
    2
    Sequence:
    Chromosome: VIII; NC_001140.6 (504476..505530, complement)

    Chromosome VIII - NC_001140.6Genomic Context describing neighboring genes Neighboring gene exopolyphosphatase Neighboring gene Smn1p Neighboring gene alpha-1,2-mannosidase MNL1 Neighboring gene serine/threonine protein kinase SCH9

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_001140.6

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The yeast ribosomal protein S7 and its genes. Synetos D, et al. J Biol Chem, 1992 Feb 15. PMID 1737755
    2. Defining the protein complexome of translation termination factor eRF1: Identification of four novel eRF1-containing complexes that range from 20S to 57S in size. Denis CL, et al. Proteins, 2018 Feb. PMID 29139201, Free PMC Article
    3. Identification of a 57S translation complex containing closed-loop factors and the 60S ribosome subunit. Denis CL, et al. Sci Rep, 2018 Jul 31. PMID 30065356, Free PMC Article
    4. Only a subset of the PAB1-mRNP proteome is present in mRNA translation complexes. Zhang C, et al. Protein Sci, 2014 Aug. PMID 24838188, Free PMC Article
    5. Characterization of the BUD31 gene of Saccharomyces cerevisiae. Masciadri B, et al. Biochem Biophys Res Commun, 2004 Aug 6. PMID 15303280

    See all (102) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables rRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables structural constituent of ribosome IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in cytoplasmic translation IC
    Inferred by Curator
    more info
    		 PubMed 
    involved_in translation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of 90S preribosome HDA PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of cytosolic small ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of cytosolic small ribosomal subunit IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in intracellular non-membrane-bounded organelle IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of protein-containing complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    ribosomal 40S subunit protein S4B
    NP_012073.1
    • Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S4, no bacterial homolog; RPS4B has a paralog, RPS4A, that arose from the whole genome duplication

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001140.6 Reference assembly

      Range
      504476..505530 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001179334.1 → NP_012073.1  TPA: ribosomal 40S subunit protein S4B [Saccharomyces cerevisiae S288C]

      See identical proteins and their annotated locations for NP_012073.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      D3DLF2, P05753, P0CX35, P0CX36
      UniProtKB/TrEMBL
      A6ZQA2, B3LQM5, C8ZA04, G2WFS7, N1P4X8
      Conserved Domains (1) summary
      PLN00036
      Location:1 → 259
      PLN00036; 40S ribosomal protein S4; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P0CX35.1
    P0CX36.1

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