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    Spn-ps sialophorin, pseudogene [ Mus musculus (house mouse) ]

    Gene ID: 20738, updated on 22-Oct-2024

    Summary

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    Official Symbol
    Spn-psprovided by MGI
    Official Full Name
    sialophorin, pseudogeneprovided by MGI
    Primary source
    MGI:MGI:104964
    See related
    Ensembl:ENSMUSG00000121678 AllianceGenome:MGI:104964
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Cd43-ps
    Expression
    Restricted expression toward testis adult (RPKM 66.1) See more
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    Genomic context

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    See Spn-ps in Genome Data Viewer
    Location:
    15 E3; 15 45.36 cM
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (90775599..90782679, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (90891396..90898476, complement)

    Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene ribosomal protein L31, pseudogene 8 Neighboring gene STARR-seq mESC enhancer starr_39485 Neighboring gene STARR-seq mESC enhancer starr_39486 Neighboring gene transcription elongation factor A (SII) 1, pseudogene 1 Neighboring gene predicted gene, 36618 Neighboring gene kinesin family member 21A Neighboring gene VISTA enhancer mm1478 Neighboring gene STARR-seq mESC enhancer starr_39489 Neighboring gene predicted gene, 52216

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Protein sequence and gene structure for mouse leukosialin (CD43), a T lymphocyte mucin without introns in the coding sequence. Cyster J, et al. Eur J Immunol, 1990 Apr. PMID 2347365
    2. Genetic nomenclature for loci controlling surface antigens of mouse hemopoietic cells. Morse HC 3rd. J Immunol, 1992 Nov 15. PMID 1431091
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_033583.1 RNA Sequence

      Status: INFERRED

      Source sequence(s)
      AC136003
      Related
      ENSMUST00000230085.3

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000081.7 Reference GRCm39 C57BL/6J

      Range
      90775599..90782679 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NG_001463.4: Suppressed sequence

      Description
      NG_001463.4: This RefSeq was permanently suppressed because it is now thought that this gene is a transcribed pseudogene.

    2. NG_020223.1: Suppressed sequence

      Description
      NG_020223.1: This RefSeq was permanently suppressed because it is now thought that this pseudogene is transcribed.
    Nucleotide Protein Strain
    Heading Accession and Version

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