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    znf271 zinc finger protein 271 [ Danio rerio (zebrafish) ]

    Gene ID: 793549, updated on 17-Sep-2024

    Summary

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    Official Symbol
    znf271provided by ZNC
    Official Full Name
    zinc finger protein 271provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-091204-74
    See related
    Ensembl:ENSDARG00000012642 AllianceGenome:ZFIN:ZDB-GENE-091204-74
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    Peg3; zfp271; wu:fb98d12; si:ch211-266d19.4
    Summary
    Predicted to enable DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    all
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    Genomic context

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    See znf271 in Genome Data Viewer
    Location:
    chromosome: 24
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 24 NC_007135.7 (2318385..2340937)
    105 previous assembly GRCz10 (GCF_000002035.5) 24 NC_007135.6 (2322341..2347762)

    Chromosome 24 - NC_007135.7Genomic Context describing neighboring genes Neighboring gene par-3 family cell polarity regulator alpha, a Neighboring gene uncharacterized LOC137489200 Neighboring gene cullin 2 Neighboring gene ras responsive element binding protein 1a Neighboring gene lymphocyte antigen 86

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Molecular codes and in vitro generation of hypocretin and melanin concentrating hormone neurons. Seifinejad A, et al. Proc Natl Acad Sci U S A, 2019 Aug 20. PMID 31375626, Free PMC Article
    2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
    4. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    enables DNA-binding transcription activator activity, RNA polymerase II-specific IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC793549; zinc finger protein 271

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007135.7 Reference GRCz11 Primary Assembly

      Range
      2318385..2340937
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009297216.4 → XP_009295491.1  zinc finger protein 271 isoform X2

      UniProtKB/TrEMBL
      A0A8M3AND1, E9QG35
      Related
      ENSDARP00000115548.2, ENSDART00000132530.3
      Conserved Domains (4) summary
      COG5048
      Location:28 → 508
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:947 → 967
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:151 → 169
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:322 → 346
      zf-H2C2_2; Zinc-finger double domain

    2. XM_001333296.6 → XP_001333332.1  zinc finger protein 271 isoform X1

      UniProtKB/TrEMBL
      A0A2R8QGS5, A0A8M1PYS3
      Related
      ENSDARP00000152230.1, ENSDART00000186328.1
      Conserved Domains (4) summary
      COG5048
      Location:28 → 508
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:947 → 967
      ZF_C2H2; C2H2 Zn finger [structural motif]
      sd00019
      Location:151 → 169
      ZF_C2H2; C2H2 Zn finger [structural motif]
      pfam13465
      Location:322 → 346
      zf-H2C2_2; Zinc-finger double domain
    Nucleotide Protein
    Heading Accession and Version

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