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    btbd16 BTB (POZ) domain containing 16 [ Danio rerio (zebrafish) ]

    Gene ID: 565632, updated on 17-Sep-2024

    Summary

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    Official Symbol
    btbd16provided by ZNC
    Official Full Name
    BTB (POZ) domain containing 16provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-100513-3
    See related
    Ensembl:ENSDARG00000027710 AllianceGenome:ZFIN:ZDB-GENE-100513-3
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Summary
    Orthologous to human BTBD16 (BTB domain containing 16). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    human mouse all
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    Genomic context

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    See btbd16 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCz11 (GCF_000002035.6) 12 NC_007123.7 (11601562..11649666, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 12 NC_007123.6 (11558389..11611387, complement)

    Chromosome 12 - NC_007123.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC137490434 Neighboring gene uncharacterized LOC137496794 Neighboring gene pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1b Neighboring gene WAPL cohesin release factor b Neighboring gene atonal bHLH transcription factor 1c

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    BTB/POZ domain-containing protein 16

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007123.7 Reference GRCz11 Primary Assembly

      Range
      11601562..11649666 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009306531.4 → XP_009304806.1  BTB/POZ domain-containing protein 16 isoform X1

      See identical proteins and their annotated locations for XP_009304806.1

      UniProtKB/TrEMBL
      A0A8M3BE27, E7F050, F8W3K7
      Conserved Domains (1) summary
      smart00875
      Location:284 → 366
      BACK; BTB And C-terminal Kelch

    2. XM_703976.8 → XP_709068.4  BTB/POZ domain-containing protein 16 isoform X1

      See identical proteins and their annotated locations for XP_709068.4

      UniProtKB/TrEMBL
      A0A8M3BE27, E7F050, F8W3K7
      Related
      ENSDARP00000124375.1, ENSDART00000149713.2
      Conserved Domains (1) summary
      smart00875
      Location:284 → 366
      BACK; BTB And C-terminal Kelch

    3. XM_068224736.1 → XP_068080837.1  BTB/POZ domain-containing protein 16 isoform X2

    Reference GRCz11 ALT_DRER_TU_1

    Genomic

    1. NW_018394833.1 Reference GRCz11 ALT_DRER_TU_1

      Range
      111517..158612 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_068218665.1 → XP_068074766.1  BTB/POZ domain-containing protein 16 isoform X1

    Nucleotide Protein Strain
    Heading Accession and Version

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